PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6BG021410.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-PHD
Protein Properties Length: 434aa    MW: 47855.2 Da    PI: 5.0481
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6BG021410.4genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-09285331652
                       S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
          Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                       ++ +e +++L + F+++  p +e +e L+++lg++ +++  WF+N R
  TRIDC6BG021410.4 285 RIPPEAVQVLRKSFAESELPAREVKESLSTELGISFEKIDKWFKNTR 331
                       667899***************************************99 PP

2PHD31.54e-112174150
                      SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS.TBSSHHHHT CS
               PHD  1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg.ewlCeeCke 50
                      +C+ C++  s  ++++++C+g Ck ++H kC +++l+++    g  wlC+ C +
  TRIDC6BG021410.4 21 ICSRCKSpeSVPNNKFIFCEGaCKMAYHEKCSEPPLDRSLPTGGpGWLCKFCLC 74
                      6999**987778*******966**************966555559*******86 PP

Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    
MEDSVMPPDE SVKSVNPDNT ICSRCKSPES VPNNKFIFCE GACKMAYHEK CSEPPLDRSL  60
PTGGPGWLCK FCLCKMKILE AVNAHLGTSL TVMCPSKDIF KEATKEVDSE DGLGEDWLSE  120
YSGDEDYDPE ENDFTSSSLD SGEESISDQS NCSGSPLYSP NDDIPGFISA DFTDAEGFYH  180
TNSNLGIDSG DDDVAEMLTY QRPKREVDYK RLNEVGALTA FHPSQEMFGK LTENEKQSED  240
EDWGTNNRRK KRRVHSAGVG VKSAEGLSDV KSNEKAQPQR RKLFRIPPEA VQVLRKSFAE  300
SELPAREVKE SLSTELGISF EKIDKWFKNT RCAALRDRKA EGNSRVAGPS KRSRRSAGKS  360
GSSVKIDSVD NSYLIPASEI ISVPTHPQGI PERKPESTSR TVRRLVHDKG APLCPPAEVK  420
ESTSPTTKPG LNPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.25e-49HB-PHD family protein