PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6AG015580.6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-PHD
Protein Properties Length: 752aa    MW: 83972.8 Da    PI: 7.7427
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6AG015580.6genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.46.4e-10454500652
                       S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
          Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                       ++ +e +++L + F+++  ps+e +e L+++lg++ +++  WF+N R
  TRIDC6AG015580.6 454 RIPPEAVQVLRKSFAESELPSREVKENLSTELGISFEKIDKWFKNTR 500
                       667899***************************************99 PP

2PHD331.4e-11201254150
                       SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
               PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 
                       +C+ C++  s  ++++++C+g Ck ++H kCl+++l+++    g   wlC+ C +
  TRIDC6AG015580.6 201 ICSRCKSpeSVPNNKFIFCEGaCKMAYHEKCLEPPLDKSLP-TGgpGWLCKFCLC 254
                       6999**987778*******966**************95555.4559*******86 PP

Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    
MNNSDKKSAC SIPRRSSERR KQSSSELVSS AKRSTGHNTS SSYKPDHCSP PKRTVRTVRN  60
VNLAKYIKNK YYRSPLSKRQ ASNAATGKTA TGPVRRRNRK RRRHNTDCDE ATRMERRARY  120
LLVKIKSEQN LIDAYSGDGW NGHSREKLKP EKELQRAQKQ IIKCKIAIRD IIHQLDLYSS  180
SGSMEDSVMP PDESVNPDNT ICSRCKSPES VPNNKFIFCE GACKMAYHEK CLEPPLDKSL  240
PTGGPGWLCK FCLCKMKILE AVNAHLGTSL TVMCPSKDIF KEATKQMDSE DGLGEDWLSE  300
YSGDEDYDPE ENDFTSSSLD SGEESISDQS NCSGSPLYSP NDDIPGFISA DFTDAEGFYH  360
TNSNLGIDSD DDDVAEMLTY QRPKREVDYK RLNEEMFGKL TENEKQSEDE DWGTNNRRKK  420
RRVDSAGVGV KSAEGSLDVK SNEKAQPQRR KLFRIPPEAV QVLRKSFAES ELPSREVKEN  480
LSTELGISFE KIDKWFKNTR CAALRDRKAE GNSRVAGPSK RSKQSAGKSG SLGKIDSVDN  540
SYLLPMPEII SVPTHPQGIP ERKPESTSRT VRRRVHDKGA PLCPPAPAEV KESTSPTTKP  600
GLNPSHVADR IINTEHRAAS REDPVAFSDD PFFDAILSYP TINTNDRAVS REDPVAFSDD  660
PFLDVMLANR DIYTEERAAS HEDVRRPSSD QPFLDVIQNV CGLEHRLQRL KGDMLSSAAA  720
PGGAGTAERD LQNQLVVLVP TAELKDKSQP SI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199103RKRRR
299126RKRRRHNTDCDEATRMERRARYLLVKIK
3100127RKRRRHNTDCDEATRMERRARYLLVKIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.22e-79HB-PHD family protein