PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3AG040620.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-PHD
Protein Properties Length: 619aa    MW: 68150.8 Da    PI: 5.2733
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3AG040620.10genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox16.31.6e-055946191338
                        HHHHHHHHHSSS--HHHHHHHHHHCT CS
           Homeobox  13 eeLeelFeknrypsaeereeLAkklg 38 
                        + L+++Fek++yps+ ++e LA++lg
  TRIDC3AG040620.10 594 QKLKAYFEKEPYPSRPAKESLAQELG 619
                        78*********************996 PP

2PHD42.61.4e-14243298151
                        SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                        +C++C +   + +++++lCdg C++ fH+kCl+++l  e++p+g   wlC+ C++k
  TRIDC3AG040620.10 243 FCAICASkhVTLKNDIILCDGvCDRGFHQKCLNPPLLAEDIPQGdeGWLCPACDCK 298
                        7******65555********77*********************999*******985 PP

Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    
MGKTSASGVV QENEKVGNGS PSSPTKGKRG RKGSQIIANK KYPLRSAHSS TRVLRSTSKD  60
KSKTPNEPVS PLRSAHSSPR VLRSTPKNKS KTPKKQVNSL RSAHSSARVL SSTLKKKVPN  120
EPVNDSTAAQ PAARKRKRGR PSNAASPKNE CIKIRQRVRY ILNRMNYEQS FIQAYAGEGW  180
KGQRCSLEKI RPEKELERAK AEILRCKLRI REAFRNMDSL LLEGKLDESL FDSEGEISSE  240
DIFCAICASK HVTLKNDIIL CDGVCDRGFH QKCLNPPLLA EDIPQGDEGW LCPACDCKLD  300
CIDLLNELQG STLAMHDSWE KVFPESTSNG LNQIGASDLP SDDSEEDYDP TLAEGDTVDE  360
NKSSAEDGDE GSDSDDLDFI TSSDESEPSK KKRSESKNKN TVNDLALPSD DSEDDDFDPE  420
GPNSSEDQKT KTNSDESDFT SDSDDFCAEI SKSSGKDKVS APSFSDQTNG VDIMEAELEQ  480
DSVLPASNRR QVGHLDYKKL YDEAYGKETT DSSDEEEWSG HSPNGNPEDS DTDSFAGPLK  540
PAKTRRARGG RQNNERTPQS ERHSGSVSEQ HPEVLSNGTS STARKKSYGP IVNQKLKAYF  600
EKEPYPSRPA KESLAQELG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115137KKKVPNEPVNDSTAAQPAARKRK
2133139ARKRKRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.12e-80HB-PHD family protein