PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG056900.8

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-PHD

Protein Properties

Length: 1126aa MW: 124937 Da PI: 4.5421

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG056900.8	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.9	4.7e-10	641	681	12	52
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 e+L+++F ++yps++ +e LA++lgLt qV WF R TRIDC1BG056900.8 641 NERLNQYFTTDQYPSRAVKESLAQELGLTFHQVNKWFESTR 681 589**********************************8766 PP
2	PHD	39.4	1.4e-13	293	348	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ ++ +++++lCdg C++ fH++Cl+++l ++++peg wlC+ C++k TRIDC1BG056900.8 293 VCATCSLqeATLNNDIILCDGaCDRGFHQNCLNPPLLTKDIPEGeeGWLCPACDCK 348 599999854555******66*****************999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1126 aa Download sequence
ARKRPVVQCF ATDHRRLAGR RRTLARCWFI WCNYVQIHIL LRLRSARRQF SEAVFFLLLE 60 YKIISGRHQM DKSNTSGCAE DTIETRSYAN SSLNPEALKH QSFPFPYTSP SGERKNFKRA 120 ANRGRKGSRV LSSRTYPLKS SESTVRVLRS RSVADKSPSD SVQTPTEKAA KKPPSDSVDT 180 LVKPAAKRIK RDRPTKGGPD DELSKIRKRI RYILNRMNYH QSFLEAYASE GWKNQSLEKI 240 RPEKELERAK EEIVRCKLRI REAFQNLDHL LTVGKLEESL FDSEGKISSD DIVCATCSLQ 300 EATLNNDIIL CDGACDRGFH QNCLNPPLLT KDIPEGEEGW LCPACDCKID CIELINELQG 360 TDLDINDSWE KVFPEAAAVA HGPMQNDVAD LPSDDSEDDD FDPNISEEHV AGHAEGSSEE 420 DGDEGSDSDD SNFMTSSDNS EHVKEKVKVD DLGLPSEDSE DDDYDPAGPD SDKDIEEKQD 480 ESDFTSDSDE FCAEITKSCS KDEVSSGPKV GGRTNDLEGA PVRPNTSMSH SKDLEIDPDV 540 ILPSTKRQVQ RLDYKKLYDD TYGEAPSESS DGDEWSGKST LKEDNEERNE VDSFARKSSR 600 GTRAVHPDGF HGLVNDQHAG GLTSAGSNSK ANKRHFGPVI NERLNQYFTT DQYPSRAVKE 660 SLAQELGLTF HQVNKWFEST RHARAAAMKN GTQLEKQSNS RKKKSSDATH MEVKDQPNAC 720 KEEGIRQHSP VKQDTDGGQR THVPPESSQS YTKTSGLIGC PKSESRENHE KNTSSKYVGM 780 PTDGSAEDQI LELEPEDEGS DSDDLNFVTR SGNSEPLKNR EKIDDLGLPS AYSEDDDYDS 840 DEVIEMMQSS SDESNFTTSS DNPEDVKEKV DDLGLPSEDS EDDDYDPAGP GSDEDIGKKQ 900 SSSEKSHSSD KSENRKTKRK VDDLGLPSED SEDDDYDPAS PDSDKDIEEK QDESDFSSDS 960 DDFCVEIAKS CCGQEGVPSG AKVGADRTDD LEGTTICANA AISNLPSKDP EMDQYVVLPV 1020 SARQKVQSPD SKKLAAYGRA PSDSSYSEEL SKKGTPEKDK GKESEAGSFV RQSNEFTPQR 1080 SQQSFHGSVN GQNAEELLTP NGSSTTGQKR QYGPIINQVL WFNRTG

Sequence ? help Back to Top

Protein Sequence Length: 1126 aa Download sequence

ARKRPVVQCF ATDHRRLAGR RRTLARCWFI WCNYVQIHIL LRLRSARRQF SEAVFFLLLE  60
YKIISGRHQM DKSNTSGCAE DTIETRSYAN SSLNPEALKH QSFPFPYTSP SGERKNFKRA  120
ANRGRKGSRV LSSRTYPLKS SESTVRVLRS RSVADKSPSD SVQTPTEKAA KKPPSDSVDT  180
LVKPAAKRIK RDRPTKGGPD DELSKIRKRI RYILNRMNYH QSFLEAYASE GWKNQSLEKI  240
RPEKELERAK EEIVRCKLRI REAFQNLDHL LTVGKLEESL FDSEGKISSD DIVCATCSLQ  300
EATLNNDIIL CDGACDRGFH QNCLNPPLLT KDIPEGEEGW LCPACDCKID CIELINELQG  360
TDLDINDSWE KVFPEAAAVA HGPMQNDVAD LPSDDSEDDD FDPNISEEHV AGHAEGSSEE  420
DGDEGSDSDD SNFMTSSDNS EHVKEKVKVD DLGLPSEDSE DDDYDPAGPD SDKDIEEKQD  480
ESDFTSDSDE FCAEITKSCS KDEVSSGPKV GGRTNDLEGA PVRPNTSMSH SKDLEIDPDV  540
ILPSTKRQVQ RLDYKKLYDD TYGEAPSESS DGDEWSGKST LKEDNEERNE VDSFARKSSR  600
GTRAVHPDGF HGLVNDQHAG GLTSAGSNSK ANKRHFGPVI NERLNQYFTT DQYPSRAVKE  660
SLAQELGLTF HQVNKWFEST RHARAAAMKN GTQLEKQSNS RKKKSSDATH MEVKDQPNAC  720
KEEGIRQHSP VKQDTDGGQR THVPPESSQS YTKTSGLIGC PKSESRENHE KNTSSKYVGM  780
PTDGSAEDQI LELEPEDEGS DSDDLNFVTR SGNSEPLKNR EKIDDLGLPS AYSEDDDYDS  840
DEVIEMMQSS SDESNFTTSS DNPEDVKEKV DDLGLPSEDS EDDDYDPAGP GSDEDIGKKQ  900
SSSEKSHSSD KSENRKTKRK VDDLGLPSED SEDDDYDPAS PDSDKDIEEK QDESDFSSDS  960
DDFCVEIAKS CCGQEGVPSG AKVGADRTDD LEGTTICANA AISNLPSKDP EMDQYVVLPV  1020
SARQKVQSPD SKKLAAYGRA PSDSSYSEEL SKKGTPEKDK GKESEAGSFV RQSNEFTPQR  1080
SQQSFHGSVN GQNAEELLTP NGSSTTGQKR QYGPIINQVL WFNRTG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	205	211	KIRKRIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	6e-75	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG056900.8