PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1180630.m01
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family E2F/DP
Protein Properties Length: 465aa    MW: 51412.4 Da    PI: 4.5409
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1180630.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.93.1e-27143208171
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        r ++sL+llt+kf++l++++e+gi++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+i+wkg
  Pd.00g1180630.m01 143 RFDSSLGLLTKKFINLIKHAEDGILDLNNAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 208
                        6789******************************...99..****************************98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    
MSGSRAHDPP AQPPQPIMQQ ALKRQLAFSS MKPPFSATAD YHGFVPDPRQ LTDSEAYGIY  60
VKPSQLKRKS DAADYEAESS DRTAAPGYTE AVTSPLQTPV SSKVGKANKT SRLTKCSRSG  120
PQTPASNVGS PSGANLTPAG PCRFDSSLGL LTKKFINLIK HAEDGILDLN NAADTLEVQK  180
RRIYDITNVL EGIGLIEKKL KNRIQWKGLD VSRTGDVDEN YPSLQAQVEN LSDEERRLDQ  240
QIREMQERLR DLSEDESNKK WLFVTEEDIK GLPCLQNETL IAIKAPHGTT LEVPDPDEAV  300
DYPQRRYRMV LRSTMGPIDV YLVSQFEEKF EEINGVEVPT DIPSSSGVNE NPATTMVTEN  360
RGKDVEIQGP DDHRMCADPT ASQDIMSGMM KIVPSDVDSD ADYWLLSDDA DISITDMWRT  420
EPGVVWNELG AIDEDYPMVN VSTPRPQTPP SSSTQVPATA NRTKT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.21e-153E2F/DP family protein