PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc05624.1.g00010.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 366aa    MW: 39801.6 Da    PI: 9.7307
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc05624.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.39.1e-32211132103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   F+ k++++++d++++ +++w   +n+f+v+d+  f++ +Lp+yFkh+nfaSFvRQLn+YgF+kv+ ++         weF+
  Zpz_sc05624.1.g00010.1.am.mk  21 FVAKTFHMVSDPATDAVVRWGLASNTFLVVDPAAFSDYLLPSYFKHRNFASFVRQLNTYGFRKVDADR---------WEFA 92 
                                   9********************999*****************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkkse 103
                                   h+sF  g+++ll  i rkk++
  Zpz_sc05624.1.g00010.1.am.mk  93 HESFLSGQTQLLPLITRKKKN 113
                                   ******************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-3312104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-4517110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.12E-2818110IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.9E-2721110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-162144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-165971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-167284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGSECKLQLH AEQQVGAIAP FVAKTFHMVS DPATDAVVRW GLASNTFLVV DPAAFSDYLL  60
PSYFKHRNFA SFVRQLNTYG FRKVDADRWE FAHESFLSGQ TQLLPLITRK KKNKPGGGGR  120
ELSDEGEEVR GTIRAVQRLR EEQRGMDEEL QAMDRRLQAA ESRPGQMMAF LAKLADEPGV  180
VLRAMLAKKE ELAAAGGNGA SPPALEAPGK RRRISGAETG RGDLGGVADQ GMGAVQFPFS  240
ALGQHAVMDV FIFSPGTHES HRDAQAEPRR GRRVSHTDAI ALATRATAAP LALRICPCAV  300
PPEVKPLALH IRPRTASPVS NSRCDLLPVR AVFKVSLARD EAALAMAHLY HFASHRPLLP  360
FTPGSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A5e-24181107110Heat shock factor protein 1
5hdn_A5e-24181107110Heat shock factor protein 1
5hdn_B5e-24181107110Heat shock factor protein 1
5hdn_C5e-24181107110Heat shock factor protein 1
5hdn_D5e-24181107110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209213KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc05624.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0663161e-167AK066316.1 Oryza sativa Japonica Group cDNA clone:J013066G03, full insert sequence.
GenBankAY3444931e-167AY344493.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311267.11e-122heat stress transcription factor C-1b
SwissprotQ942D61e-121HFC1B_ORYSJ; Heat stress transcription factor C-1b
TrEMBLA0A1B6Q5W31e-121A0A1B6Q5W3_SORBI; Uncharacterized protein
STRINGSb03g033750.11e-123(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112983141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.19e-58heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Schmidt R, et al.
    Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica.
    AoB Plants, 2012. 2012: p. pls011
    [PMID:22616023]