PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc05265.1.g00010.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 455aa    MW: 49771.9 Da    PI: 9.9876
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc05265.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260514.1e-16404452147
                        DUF260   1 aCaaCkvlrrkCakd..CvlapyfpaeqpkkfanvhklFGasnvlkllk 47 
                                   +CaaC++lrr+C +   Cvlapyfpa++p+++a vh +FG+sn ++l++
  Zpz_sc05265.1.g00010.1.am.mk 404 RCAACRYLRRRCDPAggCVLAPYFPASRPRRYADVHAVFGTSNATRLIQ 452
                                   6***********99777****************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089112.8403455IPR004883Lateral organ boundaries, LOB
PfamPF031956.2E-15404452IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
CQSFELTELS VESIHPRRGL SNFYTGKSKS FTSLAEAAAK AAAKEIAKPE NPFNKRRRVL  60
AAWSRRRASC SALATAYLPP LLAPDHAVLE EDDEEGADDS DDEDKGRRER RHPPAFPSPR  120
LSVHAQLSRS ADAGSFRSRH PSFPQKEDRP IENSSDDEPA IRWQQRVATY KQFTERSVVA  180
GNACYERGRG SSSRRGAIAF LHIDGGATEG RPVNLELLGS RLQLRIPLPA LSRQRRPTPS  240
KGPAEDPAAS PLWPLALDRS TAPWRSARGG GRAVWLPPQT RPLVPPSTTT KPQSGCCLGR  300
HAPCHLADTA CLSLKERERV CALPRDFACI DEGGHAHAHT KKRGSSTNRV SGEEDRSSKV  360
QEERTTTMNR IKTLLWSVTE KTARTSAGNT ELELGSGGSS GSGRCAACRY LRRRCDPAGG  420
CVLAPYFPAS RPRRYADVHA VFGTSNATRL IQVVC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15458KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc05265.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9475702e-88EU947570.1 Zea mays clone 347505 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.13e-08LOB domain-containing protein 4