PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc05084.1.g00030.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 283aa    MW: 29796.6 Da    PI: 8.4937
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc05084.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP101.31.6e-3124127189
                           TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............s 66 
                                   aag+kdrhsk+ T++g+RdRRvRls+++a+rf+d+qd+LG+d++sk++ WL+ +a +ai++l+++               +
  Zpz_sc05084.1.g00030.1.am.mk  24 AAGGKDRHSKVVTARGLRDRRVRLSVPTAIRFYDVQDRLGVDQPSKAVAWLIGAAAAAIDALPSLdrfsfalppavadadD 104
                                   6899*************************************************************9888855554332220 PP

                           TCP  67 sssaseceaesssssasnsssg.........k 89 
                                           a++++s+++  s+g         +
  Zpz_sc05084.1.g00030.1.am.mk 105 --------AGAEVSASE-TSKGsvlslvnapA 127
                                   ........222222222.22222444433321 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.5E-3126138IPR005333Transcription factor, TCP
PROSITE profilePS5136930.5942785IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MERVVAAGME RAACKRPRAD LDAAAGGKDR HSKVVTARGL RDRRVRLSVP TAIRFYDVQD  60
RLGVDQPSKA VAWLIGAAAA AIDALPSLDR FSFALPPAVA DADDAGAEVS ASETSKGSVL  120
SLVNAPAEIA VPAAAHQTNH AVHAYSGNAG GGGAFAQPLH CAATDDDKSM RQKGPPTLAC  180
YAAQTPSPYI TPARNLGTMP QLAFLHEEQQ QQPAVVFGLG TLQSNAVAAP LWPPAQQHPF  240
LLQRFTSADA AGLPFFLGDG AAPVTSSADR RVQFWNFKQE RKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-203286155Putative transcription factor PCF6
5zkt_B4e-203286155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc05084.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1012152e-62FP101215.1 Phyllostachys edulis cDNA clone: bphylf044o06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963209.11e-97transcription factor PCF8
SwissprotA2ZMR95e-67PCF8_ORYSI; Transcription factor PCF8
TrEMBLA0A1E5WN181e-100A0A1E5WN18_9POAL; Transcription factor PCF8
STRINGPavir.Ca02949.1.p1e-98(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.24e-20TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2