PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc05077.1.g00010.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 241aa    MW: 27546.5 Da    PI: 9.9125
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc05077.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.1e-057092123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  + C +Cgk F  + + ++H +++
  Zpz_sc05077.1.g00010.1.am.mk 70 FMCRKCGKAFAVRGDWRTHEKNC 92
                                  89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.4E-75690IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.46E-75690No hitNo description
PROSITE profilePS501578.8087090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MQMHMWGHGS QYRKGPESLR GTQPTAMLRL PCYCCAAGCR NNIDHQRARP LKDFRTLQTH  60
YRRKHGIKPF MCRKCGKAFA VRGDWRTHEK NCGKLWYCSC GSDFKHKRSL KDHIRAFGRG  120
HAACGIVCFD DLDDDDRDPS SEVDHTATTS TSTTGVVPPR RCQRSQQPPR DAIDVQRLRR  180
PEDTIGHTPM QVERERVCRE YGGSSLRRMA LEPFRLAASM HTKGVSAMKQ AFLSPMLLQD  240
V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432610.0AC243261.1 Panicum virgatum clone PV_ABa107-B06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227506.12e-99PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-88ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLI1GXB82e-99I1GXB8_BRADI; Uncharacterized protein
STRINGBRADI1G36067.16e-99(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.14e-87C2H2 family protein