PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04841.1.g00020.1.am.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 319aa    MW: 34003.3 Da    PI: 8.3977
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04841.1.g00020.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.4e-12138184455
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     +    Er+RR r+ +++ +Lr+l+P+      +K++Ka+i   AveY+ksLq
  Zpz_sc04841.1.g00020.1.am.mkhc 138 KTVVLERKRRVRMTEKLYQLRSLVPNI-----TKMDKASIIGDAVEYVKSLQ 184
                                     55679*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.55E-13132184No hitNo description
PROSITE profilePS5088815.707134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-16134203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16136200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9138184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MERHLLQPQH LMPSSGFFNL NGGSVAHFPS CGGCGFAAAP AGLLHDCGWA GDPMQLGGEM  60
FGGGVNTVCA LVGNQGWQGV DGSSLRDPPQ ASISLDGDGD GRPPLAVAER QSVPELAAKP  120
RRDEGNVMGA RKRKDRAKTV VLERKRRVRM TEKLYQLRSL VPNITKMDKA SIIGDAVEYV  180
KSLQSHARKL KEEVAALEAR QWSSSPGPQD PRHDHGVAVA NDKRQDEDAT GGARVASVGA  240
TRVGEGRFLV TVECERRDGE AARLFAAVES LACFRVESSS VGRSAPDRLV STATLKVTIA  300
GGGAAHSFRH ALDARLHDD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131146KRKDRAKTVVLERKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04841.1.g00020.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826116.14e-92transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like isoform X2
TrEMBLA0A2S3I6T61e-90A0A2S3I6T6_9POAL; Uncharacterized protein
STRINGPavir.Ga01979.1.p4e-85(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.12e-35FER-like regulator of iron uptake