PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04639.1.g00030.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 295aa    MW: 31100 Da    PI: 7.574
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04639.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-1086153354
                                   HHHHHHHHHHHHHHHHHHHHHHCTSCC.C..................TTS-STCHHHHHHHHHHHHHH CS
                           HLH   3 rahnerErrRRdriNsafeeLrellPk.as...............kapskKlsKaeiLekAveYIksL 54 
                                   ++h+e+ErrRR+riN  +++Lr ++P  +                  +++ ++Ka+ L +++ ++k+L
  Zpz_sc04639.1.g00030.1.am.mk  86 KNHSEAERRRRERINAHLATLRGMVPCtDKlagyitkpaacarlpWRRAGDMDKAALLAEVITHVKKL 153
                                   58*************************77799999999999999877888899999999999999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.32583153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-886153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-1287171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-1287179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-689159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00108197263No hitNo description
Gene3DG3DSA:3.30.70.2606.9E-4197243No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSSFADHRLG GGNLNGDMSS VPLSDSELIY AGFGGGHGHD DLSQQLVAST SPVLSDGNAQ  60
DLDAETKETV TTKKGDRGEK AATALKNHSE AERRRRERIN AHLATLRGMV PCTDKLAGYI  120
TKPAACARLP WRRAGDMDKA ALLAEVITHV KKLKTSAAQL SSECPAVPAD ADEVTVELAQ  180
DSSPSSSSHA GVLIKATMSC EDGSDLFAEV KKALRPLRLR VVGSEVTTLG GRVRFTFLVS  240
PCAGAGDVVS VVDSVHQALQ AVIDKASSAL EFAPRASLLN KRRRVSTFES SSSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19196ERRRRE
2280284KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04639.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457128.11e-91transcription factor bHLH30
TrEMBLA0A1B6Q0Z43e-90A0A1B6Q0Z4_SORBI; Uncharacterized protein
STRINGSb03g001730.15e-91(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-27bHLH family protein