PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04533.1.g00010.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 235aa    MW: 25185.6 Da    PI: 9.001
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04533.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-05106128123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y+C++C++ F++   L  H+++H
  Zpz_sc04533.1.g00010.1.am.mk 106 YTCGYCKREFRSAQALGGHMNVH 128
                                   9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.63E-6105133No hitNo description
PROSITE profilePS5015711.094106133IPR007087Zinc finger, C2H2
PfamPF139121.6E-6106129IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MVVNVSSPLS DLLGSGSFGR LKGVLSRRKA PARLGKTCHL VFPGTASDKV DYSHNTPQAM  60
ERDHGRGLKH QHQHQQQQVA WTPGHNFGLS GCFSWPAVPQ PLTSSYTCGY CKREFRSAQA  120
LGGHMNVHRR DRARLRQCCP GYAPSPNLIA AHHRRAAAAG PPLSNLNFVP PHCAGATTTE  180
PVVYSFFSTT TTSAMKAAVQ VNLELGISGG VCGHDGAVPE EGGLDLELRL GCPLE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9591933e-36EU959193.1 Zea mays clone 211832 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447484.16e-36hypothetical protein SORBIDRAFT_06g001730
TrEMBLK3YC539e-54K3YC53_SETIT; Uncharacterized protein
STRINGSi011797m2e-53(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.14e-17C2H2 family protein