PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04250.1.g00020.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 825aa    MW: 88175.2 Da    PI: 10.858
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04250.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.83e-06359387331
                                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
                           HLH   3 rahnerErrRRdriNsafeeLrellPkas 31 
                                    +h+ +Er RR++i +++  L++l+P +s
  Zpz_sc04250.1.g00020.1.am.mk 359 NSHSLAERLRREKISERMKLLQDLVPGCS 387
                                   58************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-7354388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.80E-4354390No hitNo description
PROSITE profilePS508889.883356413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-7359398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 825 aa     Download sequence    Send to blast
MTARSSTGEC NAPRPASVAV HKTGQRESGN KTWMAKEARR AHPYWATIFS SSLGTRKPLG  60
VARNLSRLVI YVACGPRSGE PEVVSFPLLG FPALLHRATS ALLREVQPRS TDMNNESNEK  120
GMESNRASSG VAGIPVEWQN QFSAAFPCPP AQQQAPMMDS FASAGLWAST SQAMGLSDAI  180
SAARGTGFLA PVPGFLPQGL GHFPVDSGFI ERAARASCFG GGGEMMGSSA GFGAADQPMS  240
NAFSGSSEAL LDRQRKDGND KAEPELDGHE EVPSSEAAGG DCSSKGTLDS KKRRRPNEVQ  300
SSNLPANSAN ESVHSKDKGE ESSPATTAGK SKGKGAKETS DAQKEEYIHV RARRGQATNS  360
HSLAERLRRE KISERMKLLQ DLVPGCSKVT MAYPSLGSQD LSMRPSQDGF QMRSRTGRRS  420
TPMKPASHPC AAVRDTLARL RRPVRLHAAG RLARSRWVGV SYGDSDAGSD NPARASGPAC  480
HIPSTCLAPR ARCRRSRSPT NVHRRTPVEV VRAPRDESRF VPRTRCHLPR HALYSTTAFL  540
SPEELNMNSP AGRPFLSISS VFADRPLPTR TLRVAATDIP GPSPEPHGMH GRMENWKDKQ  600
HSQHGAATCN WNVARSYRCL RLSETSFSSA PRGMTQMRRP CGAQGQRPET TRGHVRSSDS  660
GLPAQQQLTS GTGTPMVGTG MARGRRGPAT IAATWPDPAQ PGGGTACPEG GASPSPVSIS  720
PPPFGAPDHS PISSTLPHLG MQQPVVPRRA INTDTSLALF LVECGTGRSL KCKRGIAAPG  780
REPCLAVASA WNYGGNQIAR TTASVRGATR PRIKKRERLD TARTV
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04250.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1214185e-75AK121418.1 Oryza sativa Japonica Group cDNA clone:J023133H05, full insert sequence.
GenBankHQ8588635e-75HQ858863.1 Oryza sativa Japonica Group isolate UT1672 bHLH- transcription factor mRNA, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.35e-27bHLH family protein