PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04026.1.g00050.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 379aa    MW: 40686.6 Da    PI: 8.3666
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04026.1.g00050.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.6e-13309354655
                                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     +++Er RR +i +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  Zpz_sc04026.1.g00050.1.sm.mkhc 309 SIAERVRRTKISERIRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 354
                                     689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.945303353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-16306364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.03E-13307358No hitNo description
Gene3DG3DSA:4.10.280.101.5E-15308369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-10309354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-13309359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MYGSPVSKDL NLPVQPPMTS SGLLRYRSAP STTLGELCED FLPTGPRAGS PDAGTDNVFS  60
RFLADHQIRD KPPAPPVPAA AHFPNEAAMA SQQQQMMFHS QQQQQQQMSA VESGLYRTVS  120
SCMEGANAAG AGVSNLIRQS SSPAGFLNHL SMDNGYTNML RAGVGVGFRN DSSAAAADSP  180
AAGAGGSRLK GQLSFSSRQG SLMSQISEME SEELGGSSPE GAGGGRGFIP GYPMGSSGWE  240
DSSSLMTDNM SRMKRPRESS EPGQNGLAHQ FSLPKTSSEM AVIEKFLQFQ DAVPCKIRAK  300
RGCATHPRSI AERVRRTKIS ERIRKLQELV PNMDKQTNTS DMLDLAVDYI KDLQKQVKVL  360
NESRANCTCA ASKHQQYSG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04026.1.g00050.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804212.10.0transcription factor bHLH130-like
RefseqXP_025804213.10.0transcription factor bHLH130-like
TrEMBLA0A2S3H3450.0A0A2S3H345_9POAL; Uncharacterized protein
TrEMBLA0A3L6QNR10.0A0A3L6QNR1_PANMI; Uncharacterized protein
STRINGPavir.Ba00676.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-61bHLH family protein