PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03988.1.g00040.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 399aa    MW: 41862.8 Da    PI: 6.9676
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03988.1.g00040.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.22.9e-13115164355
                                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   ++h ++Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  Zpz_sc03988.1.g00040.1.sm.mk 115 TSHIAVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVNYIKELQ 164
                                   68*************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.513112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-13115176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-17115187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.01E-14115168No hitNo description
SMARTSM003534.9E-12118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MAEALCDQLF ADDVLDGELH HRPSDAEDLF GILEAWEDCV SGGSSVNTPR GGGGVDARGG  60
KRRPPQGGCD VDSRDPDDGS SMVVQEPAKR QRCSPAPVAV VSTAGEGGAG KATATSHIAV  120
ERNRRKQMNE HLAVLRSLMP CFYVKRGDQA SIIGGVVNYI KELQQLLQSL EAKKQRKAYA  180
DQVLSPRPPP ACCSPRPPLS PRPPLPFKST PPMSPRPAVP ISPRTPLTTP SSPYNKLICR  240
QPSLSLPLPL PLPLPLPLPP APGSAYASPA MTPTTSQESA ASASSYLPSL DAIAAELCAY  300
AANGKQQATA PAGGGGVVVL PEVKVEFSGA NLVVKTVSQR APGQAVKVIA ALEGRSLEIL  360
HAKISAVDDT AVNSFTIKIG IECDLSAEEL VQEIQQAFS
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03988.1.g00040.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437061.11e-154transcription factor SPEECHLESS
TrEMBLA0A1E5UP881e-155A0A1E5UP88_9POAL; Transcription factor SPEECHLESS
STRINGPavir.Db01402.1.p1e-153(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.11e-34bHLH family protein