PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03823.1.g00040.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 237aa    MW: 25201.4 Da    PI: 10.824
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03823.1.g00040.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.3e-0785107123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y+C++Cg+ F r  nL+ H r+H
  Zpz_sc03823.1.g00040.1.sm.mk  85 YVCEICGQGFQREQNLQMHRRRH 107
                                   9*********************9 PP

2zf-C2H211.80.00074190212123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C  C k +  +s++k H++t+
  Zpz_sc03823.1.g00040.1.sm.mk 190 WVCARCAKGYAVQSDYKAHLKTC 212
                                   58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.05E-884107No hitNo description
Gene3DG3DSA:3.30.160.606.5E-684107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.75985107IPR007087Zinc finger, C2H2
SMARTSM003556.5E-485107IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SMARTSM00355110154184IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.05E-8185210No hitNo description
SMARTSM00355270190217IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MALVKSHHQM LASSSTSSSS PSASKQRKPP PPPAPRSSAS ASCPAAAAAD QPSPVKRKRR  60
PPGTPDPDAE VVALSPRTLL ESDRYVCEIC GQGFQREQNL QMHRRRHKVP WRLVKRSAAP  120
GSGSTGEDGA SNGNTSGGTG GGGGGAGAAR KRVFVCPEPS CLHHDPAHAL GDLVGIKKHF  180
RRKHGGRRQW VCARCAKGYA VQSDYKAHLK TCGTRGHSCD CGRVFSRYAP NNAELVR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126111e-108CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008660353.11e-105PREDICTED: protein SHOOT GRAVITROPISM 5-like
SwissprotF4IPE34e-89IDD15_ARATH; Protein SHOOT GRAVITROPISM 5
TrEMBLW5DWH01e-105W5DWH0_WHEAT; Uncharacterized protein
TrEMBLK7VNU91e-105K7VNU9_MAIZE; Uncharacterized protein
STRINGGRMZM2G074032_P011e-104(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-78indeterminate(ID)-domain 14