PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03811.1.g00060.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 261aa    MW: 28241.9 Da    PI: 6.7998
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03811.1.g00060.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.75.2e-35111220189
                           TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......ea 75 
                                   aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak+ai e+++ +  +a +       e+
  Zpz_sc03811.1.g00060.1.am.mk 111 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIRNAKAAIEEIPDRPEAAAAAEaaaeatEQ 191
                                   689**************************************************************5444411111211122 PP

                           TCP  76 esssssasnsssg....................k 89 
                                   ++++ s+     +                    +
  Zpz_sc03811.1.g00060.1.am.mk 192 GEQVPST-----SygfsnpggaitavaggsfvqH 220
                                   2222222.....1334455655655555555532 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.4E-32113213IPR005333Transcription factor, TCP
PROSITE profilePS5136931.957114172IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MASRVSFRAE QDFKLEEDKN QLSEGLDPWS NNPTATTSTL HYLLQEKERA QAQEQLQIYH  60
HQGFSYLEHH RRQQQNQSTG GAGCDGLSSG ESTPVDALTT AFGSGRIVRS AAGRKDRHSK  120
VCTARGLRDR RVRLAAHTAI RFYDVQDRLG YDRPSKAVDW LIRNAKAAIE EIPDRPEAAA  180
AAEAAAEATE QGEQVPSTSY GFSNPGGAIT AVAGGSFVQH SGADGVKSLF PSSSTASTTP  240
AHDEYRGSPP DLLSRTTSSQ P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-19119173155Putative transcription factor PCF6
5zkt_B3e-19119173155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03811.1.g00060.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9721191e-158EU972119.1 Zea mays clone 375445 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972181.11e-143transcription factor PCF7
SwissprotA2WV687e-97PCF7_ORYSI; Transcription factor PCF7
SwissprotQ8LT057e-97PCF7_ORYSJ; Transcription factor PCF7
TrEMBLA0A368RB941e-142A0A368RB94_SETIT; Uncharacterized protein
STRINGPavir.Eb03208.1.p1e-132(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.35e-30TCP family protein