PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03807.1.g00060.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 407aa    MW: 43761.9 Da    PI: 11.0921
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03807.1.g00060.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.82e-13164210455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                   +h e+Er+RR+++N++f  Lr ++Pk +      K++Ka+ L  A+ YI++L+
  Zpz_sc03807.1.g00060.1.am.mk 164 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIQELE 210
                                   799***********************66......****************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.8E-9264IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-16163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.63E-14163214No hitNo description
SuperFamilySSF474591.7E-16163215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-11164210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-16166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
LASRRHAWAA VDPCGPAPGW FVRASLAQAA GLRTVVFLPC NGGVLELGSV VPVRETPEAL  60
RAIEAALAIT PSAPEESMRI FGKDLSRRGQ LPAAAQANWA PPQLGGQSSP DDRKKDAVEQ  120
KPRDPPPKRV DFTKLEPNGQ AVVEERKPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF  180
YALRAVVPKI SKMDKASLLS DAIAYIQELE DRLRGGAKSP PAVEVKAMQD DVVLRVTTPL  240
HAHPASRVFH AIRDARLSVV ASELAVADDA VTHTLMLRSP GPERLTAEAV LAAMSRATEG  300
RDTPSPPASV AYAPFTLTTG RSCAFSAPSK SFLLRGRHPC DVWEPRRPRV VVKWKSGGGA  360
RASDGSRGAS ACYARGRGKG RRGDGTRLGL GGAGVHGGSA ERRRPIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-24158213257Transcription factor MYC2
5gnj_B2e-24158213257Transcription factor MYC2
5gnj_E2e-24158213257Transcription factor MYC2
5gnj_F2e-24158213257Transcription factor MYC2
5gnj_G2e-24158213257Transcription factor MYC2
5gnj_I2e-24158213257Transcription factor MYC2
5gnj_M2e-24158213257Transcription factor MYC2
5gnj_N2e-24158213257Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145153RKPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03807.1.g00060.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0649461e-104AK064946.1 Oryza sativa Japonica Group cDNA clone:J013000P16, full insert sequence.
GenBankAP0030231e-104AP003023.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0684B02.
GenBankAP0033811e-104AP003381.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0692C11.
GenBankAP0149571e-104AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-104CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456225.11e-128transcription factor bHLH13
TrEMBLC5XHM51e-126C5XHM5_SORBI; Uncharacterized protein
STRINGSb03g032420.11e-127(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.17e-44ABA-inducible BHLH-type transcription factor