PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03787.1.g00020.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 310aa    MW: 33599.3 Da    PI: 9.6219
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03787.1.g00020.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17151184134
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                   Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Zpz_sc03787.1.g00020.1.sm.mk 151 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 184
                                   *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.23E-13142185No hitNo description
SMARTSM004011.6E-18145197IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.268149181IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-14149184IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.62E-14150182No hitNo description
PfamPF003202.2E-15151184IPR000679Zinc finger, GATA-type
PROSITE patternPS003440151176IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEGDQDQGLF PAFRIAKDPP ILFPFMIDSP VDQHPGQSYG EQHLRQQFKD HLMMGGSDVI  60
FPRPSPFRPT IQSIGSDMIQ RSKYDPYDIE NYRADGSTGR WAVAPPAKMK IMRKATSEYP  120
EGGAARKPRR KAQAHQDESQ QQQATGVVRV CSDCNTTKTP LWRSGPCGPK SLCNACGIRQ  180
RKARRAMAAA AAAAASNGGA AVTVMVPEQT KRAKKEKRAE VDRSLPFKKR CKMAAVDQAA  240
TAAKAVPAVA VPIPKEDQDQ VLPADSTETA PSLQSKGSTP PPATFHAFPA DEITDAAMLL  300
MTLSCGLVHT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03787.1.g00020.1.sm.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280502e-59KJ728050.1 Zea mays clone pUT6196 C2C2-GATA transcription factor (GATA15) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795730.11e-149putative GATA transcription factor 22
SwissprotQ6YW481e-116CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A2S3GN701e-148A0A2S3GN70_9POAL; Uncharacterized protein
STRINGSi019058m1e-129(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.12e-19GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]