PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03682.1.g00030.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 548aa    MW: 58616.6 Da    PI: 7.938
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03682.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00081367389123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   + C +C+k F  + + ++H +++
  Zpz_sc03682.1.g00030.1.am.mk 367 FMCRKCSKAFAVRGDWRTHEKNC 389
                                   89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.88E-6351387No hitNo description
Gene3DG3DSA:3.30.160.601.5E-5353387IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MGDRYTNFLR GYYPHFAPPS NPPPASSTSI FSSYATSYLH PPPPSPPIRE ALPLLSNLTP  60
PSTTTQPQHH DDVQDQKDRC KLMSLISSCS NSAGVQEATA DQAEEVTVAL HIGLPSPSPS  120
ESAAMAAGSG AENQEPAAER QGSQQRDDGG GDEDEGEDAM VVGCASIGIG RLTKGQYWIP  180
TPSQILIGPT HVCCGVDLGG GSAAAAAAVA VRVCLQASIA NLISLSRSLC DPVYGVHHFF  240
DLIEPSRSRG TEACSNGGRG ERPLTWGRTL YSYGGLPHTT HPTTSSGLQS AQSIRSDPSM  300
HMWGHGSQYR KGPESLRGTQ PTAMLRLPCY CCAAGCRNNI DHPRARPLKD FRTLQTHYRR  360
KHGIKPFMCR KCSKAFAVRG DWRTHEKNCG KLWYCTCGSD FKHKRSLKDH IRAFGRGHAA  420
CGIDCFDDLD DDDRDPSSEV DHAATTSAST ATVVAAVVGA NARNNHAPWD AIDVERLRQP  480
KDIIGNEAAS VLGAAEEHCR SSIYAGARGA RRPATRSLLH VRSLAGCRVG LVTGAGMSRG  540
QPAFPATG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432610.0AC243261.1 Panicum virgatum clone PV_ABa107-B06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227506.15e-97PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY15e-86ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLI1GXB86e-97I1GXB8_BRADI; Uncharacterized protein
STRINGBRADI1G36067.12e-96(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15363511
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-81C2H2 family protein