PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03616.1.g00020.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 264aa    MW: 27142.8 Da    PI: 8.3556
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03616.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00031941123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C+ Cg++F++   L  H  +H
  Zpz_sc03616.1.g00020.1.am.mk 19 FECKTCGRRFPTFQALGGHRASH 41
                                  89**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.59E-81789No hitNo description
SMARTSM003550.111941IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-121943IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.0531946IPR007087Zinc finger, C2H2
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
PfamPF139121.2E-96691IPR007087Zinc finger, C2H2
SMARTSM003550.746789IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.8716794IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MMENELLLQR QQPGGGRLFE CKTCGRRFPT FQALGGHRAS HRRPGPSGFV TGIRKLEAAC  60
AGGPRVHGCP ICGAEFAVGQ ALGGHMRRHR AAAASAGTQA EICSSGDTAS ATVENRGEDC  120
VRGICLELNL ALPACCAKCQ KDAGLGSKAC TKRRDGSALA LELRLCGWCT HRVDLRGEGS  180
IERGAVLLAS ASSLEGMDPV VDGGEVRGLG SGGAWVKTQE EGTAAGRGAR AARCWGGVKE  240
RADVGGGGVC ELDGGGGAKV KTQE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008650662.14e-43PREDICTED: zinc finger protein ZAT12-like
TrEMBLA0A096PKG14e-43A0A096PKG1_MAIZE; Uncharacterized protein
STRINGAC206217.2_FGP0061e-42(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62822138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-16C2H2 family protein