PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03420.1.g00020.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 320aa    MW: 34920.4 Da    PI: 9.1207
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03420.1.g00020.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.71.6e-32271192103
                                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS
                    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 
                                     Fl+k+++++e+++++e++sw e+g+sfvv+++ efa+++Lp +Fkh nf+SFvRQLn+YgF+kv  ++         we
  Zpz_sc03420.1.g00020.1.sm.mkhc  27 FLTKTHQMVEERATDEVVSWAEQGRSFVVWKPVEFARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDR---------WE 96 
                                     9*****************************************************************99.........** PP

                                     EEESXXXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  81 FkhksFkkgkkellekikrkkse 103
                                     F++++F++g++ l++ i+r+ks+
  Zpz_sc03420.1.g00020.1.sm.mkhc  97 FANENFRRGEQGLMSGIRRRKST 119
                                     ********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-5323116IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-3523116IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-3123116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-2827116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-172750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-176577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-177890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MAGAVAAAGQ PPKGGGRGGG GGGPAPFLTK THQMVEERAT DEVVSWAEQG RSFVVWKPVE  60
FARDLLPLHF KHCNFSSFVR QLNTYGFRKV VPDRWEFANE NFRRGEQGLM SGIRRRKSTT  120
PQSAKSGGCA VNVAFSPPLP PLPPTTSGGN DRSSSSTSSP PRANLTSENE QLKKDNHTLA  180
AELAQARRHC EGLLGFLSRF LDVRQLDLGL LMQEDMRAAG DRQQCRAVAD QDCSDEEKSV  240
KLFGVLLKDA ATKRARCQEA AASERPIKMI RVCEPGFGVP SSGPGRYGGR DIARKTARLY  300
ACAYEYVHVQ VMEDDHNSQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B3e-20271205109Heat shock factor protein 2
5d8l_B3e-20271205109Heat shock factor protein 2
5d8l_D3e-20271205109Heat shock factor protein 2
5d8l_F3e-20271205109Heat shock factor protein 2
5d8l_H3e-20271205109Heat shock factor protein 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11422GGRGGGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03420.1.g00020.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277541e-160KJ727754.1 Zea mays clone pUT5697 HSF transcription factor (HSF21) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802216.11e-140heat stress transcription factor B-1-like isoform X1
SwissprotQ67TP91e-126HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLA0A1E5VP741e-145A0A1E5VP74_9POAL; Heat stress transcription factor B-1
STRINGPavir.Bb02269.1.p1e-148(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-53heat shock factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Grand X, et al.
    Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns.
    Plant Biotechnol. J., 2012. 10(7): p. 840-50
    [PMID:22607456]