PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03148.1.g00040.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 298aa    MW: 31543.2 Da    PI: 8.8558
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03148.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind93.22.8e-29211312103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT........ CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks........ 74 
                                   F+ k+y++++d++++ ++ w +++nsfvv d+  f++++Lp +Fkhsnf+SFvRQLn+Y      + +   ++        
  Zpz_sc03148.1.g00040.1.am.mk  21 FVAKTYRMVDDPATDGVVAWGADNNSFVVADPFAFSQTLLPAHFKHSNFSSFVRQLNTYVRALRLSARVV-RApeaprrtt 100
                                   9**********************************************************64433333322.2245566655 PP

                                   ..XTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  75 ..kekiweFkhksFkkgkkellekikrkkse 103
                                     +++ weF+h sF +g+++ll++i r++s+
  Zpz_sc03148.1.g00040.1.am.mk 101 kvDPDRWEFAHVSFLRGQTHLLRHIVRRSSS 131
                                   4449************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.0E-3417128IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.6E-4217128IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.54E-2917128IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.3E-122144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.4E-2521128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.3E-125971IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.3E-127284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MTSGVVVADA AAAAPVGVAP FVAKTYRMVD DPATDGVVAW GADNNSFVVA DPFAFSQTLL  60
PAHFKHSNFS SFVRQLNTYV RALRLSARVV RAPEAPRRTT KVDPDRWEFA HVSFLRGQTH  120
LLRHIVRRSS SNNGGGGGKR KDDGGTGEKE GAAAVAMEVA RLKREQRAIE DQVAAMWRRV  180
QETERRPKQM LAFLVKVAGD PQVLRRLLDS SSGGLDGGGA GHGLSASGSS DGAGAEIVKR  240
PRLLLDGDLA GRHAATGIYG AGDDDVDGFF AADDVGFGVG DSGFSPQYAF PVDSTSGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-211213020131Heat shock factor protein 1
5d5v_B8e-211213020131Heat shock factor protein 1
5d5v_D8e-211213020131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03148.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9766694e-67EU976669.1 Zea mays clone 986698 heat shock factor protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799113.11e-103heat stress transcription factor C-2a-like
SwissprotQ6EUG41e-94HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLA0A2T8KUN31e-102A0A2T8KUN3_9POAL; Uncharacterized protein
STRINGGRMZM2G105348_P011e-102(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-47heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]