PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03060.1.g00090.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 396aa    MW: 41382.1 Da    PI: 6.0584
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03060.1.g00090.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.2e-082212591255
                                   HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Zpz_sc03060.1.g00090.1.am.mk 221 RRERIAERMKALQELVPNA-----NKIDKASMLDEIIDYVKFLQ 259
                                   ******************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.005209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-7215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-12217269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.22E-9221263No hitNo description
PfamPF000105.4E-6221259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-12222268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MQPVGEMQGD GGGGGGQDDF FNQMLSTLPT AWNELGSGKS PWELPAGASE DPAFDESALL  60
ASRLRHHQIG GGGDKPVMLH LSDLHGLAGV GGGEDGGNAG FLPLPLFADR TREDIDAAAA  120
AFKSPNAVGG DQALYNGFGA AGMQGASAVQ PPPPFGQVRH EPVPAADQCQ RRASEEAWLR  180
VAGRHRRPER RQEEGRRHRG SNACGRGEGK PRTLTASPNL RRERIAERMK ALQELVPNAN  240
KIDKASMLDE IIDYVKFLQL QVKVLSMSRL GGASAVAPLV ANMSSEGNVN GNRSENGCSS  300
SSLRLTEQQV AKLMEEDTGS AMQYLQGKGL CLMPISLASA ISATSSSILP RPTVHPTGGA  360
GGTLHDGGSP ASPPLGNGAC GDDSQTVKDG DAVDRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03060.1.g00090.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151181.11e-138uncharacterized protein LOC100284814
TrEMBLA0A1D6HN741e-142A0A1D6HN74_MAIZE; Transcription factor bHLH69
STRINGPavir.Aa00205.1.p1e-136(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.12e-51LJRHL1-like 3