PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03046.1.g00050.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 192aa    MW: 21241 Da    PI: 5.0195
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03046.1.g00050.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.6e-09681071155
                                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                      RR++i +++ +L++l+P++      K +Ka++L + ++Y+k Lq
  Zpz_sc03046.1.g00050.1.sm.mkhc  68 LRREKISDRMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 107
                                     6******************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.27557106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-963112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-1367116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-668107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.34E-1169111No hitNo description
Gene3DG3DSA:4.10.280.107.3E-1470111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGNYQLHIWG VYMENSSGSY FSSWPDSKEF FRGRLPSFAT IQETNLPGGD FKTQKQKVLT  60
ATSYLLQLRR EKISDRMKNL QDLVPNSNKA DKASMLDEII DYVKFLQLQV KGCCDQPLSA  120
PTAAHGLSDA QDSEDSEDTL AFEQEVVKLM ETSVTSAMQY LQNKGLCLMP VALASSISNE  180
KGTAGAAVPA QR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03046.1.g00050.1.sm.mkhc
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4686542e-41DQ468654.1 Zea mays bHLH transcription factor PTF1 mRNA, complete cds.
GenBankEU9578572e-41EU957857.1 Zea mays clone 1627284 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812392.19e-61transcription factor bHLH110-like
SwissprotQ9ZUG94e-34BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A2S3HL112e-59A0A2S3HL11_9POAL; Uncharacterized protein
STRINGPavir.Db01966.1.p5e-58(Panicum virgatum)
STRINGPavir.J15280.1.p8e-60(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-36LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]