PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02964.1.g00050.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 235aa    MW: 24919.4 Da    PI: 9.0976
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02964.1.g00050.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.93.3e-07137163430
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                                     +h+ +Er RR++i +++ +L++l+P +
  Zpz_sc02964.1.g00050.1.sm.mkhc 137 SHSLAERARREKISERMKTLQDLVPGC 163
                                     8************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.34E-5131165No hitNo description
SuperFamilySSF474591.96E-8131165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.274133185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-9136165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-5137163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEPAPADATE LWRPPHIPGG GGHAAEAVSA VTEKSNGSRG VAGASRKRQR EPPASEDDSS  60
RIFSTSGGGA GGQDLTDSQA KRFKANKCSN DNSSKKTEAQ TDAKSAGKAA SQNTPAIEPP  120
KQDYIHVRAR RGQATDSHSL AERARREKIS ERMKTLQDLV PGCNKFLSLK LEAVNAHVSS  180
GVGAFPSKDF GAQTQTYNTA PGLTFDTQAP IEYSQGAATP EWLHMQIGGA YERVS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02964.1.g00050.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796030.11e-113transcription factor BHLH089-like
SwissprotQ84T083e-94BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A2S3IH301e-111A0A2S3IH30_9POAL; Uncharacterized protein
STRINGPavir.J31567.1.p1e-112(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-49BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]