PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02884.1.g00010.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 393aa    MW: 41633.6 Da    PI: 5.5836
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02884.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.23.8e-10138182655
                                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                      Er+RR r+++++ eLr l+P+      +K++Ka+i   Av Y+k+Lq
  Zpz_sc02884.1.g00010.1.am.mk 138 IVSERKRRVRMKERLYELRALVPNI-----TKMDKASIIADAVVYVKNLQ 182
                                   568*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-15129198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.39E-13129182No hitNo description
PROSITE profilePS5088815.269132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-15134197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-11138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-7138182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
PPPPPPNSSA MEHDLLQLLH LPAQDHLLLS SGFFGVATGG GGAAVHTPCG DAAGLDDCGW  60
MEDLMHLGDE LFAGDDDTAA GPGVDHQLLS MCGSWSPEGP PAPSVSLELD GAEGSPPSVE  120
QDDASAATRK RRDRSKTIVS ERKRRVRMKE RLYELRALVP NITKMDKASI IADAVVYVKN  180
LQSRATKLKE EVATLEATPR PAAARHQQQQ QHPKQHAAAD RRQQSRGGRL PAPDGDDNDD  240
GSAGPAGARV MNVDVTQVGD GRFYVTVECE RRDGVAAPLY SAVESLACFR VESSSFGRSG  300
HDRVVSTHIL KGSDQVGNAT VGEGTVNLWM MAALLKEGFQ PEATAPIPDC PKAPPQLPPP  360
PAPTPASCVP PQGLPTADAQ HEKRTRNPVG VDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129144KRRDRSKTIVSERKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02884.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825747.11e-110transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
TrEMBLA0A2T7CTZ11e-110A0A2T7CTZ1_9POAL; Uncharacterized protein
STRINGPavir.J29678.1.p1e-112(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.11e-42FER-like regulator of iron uptake