PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02839.1.g00050.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 404aa    MW: 43668.9 Da    PI: 5.9737
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02839.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-05233252120
                                   EEETTTTEEESSHHHHHHHH CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                   ++Cp C k+F+r  n++ H+
  Zpz_sc02839.1.g00050.1.am.mk 233 FSCPVCLKTFNRYNNMQMHM 252
                                   89*****************9 PP

2zf-C2H212.60.00042319339323
                                   ETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                                   C +Cgk F  k + ++H +++
  Zpz_sc02839.1.g00050.1.am.mk 319 CRKCGKAFAVKGDWRTHEKNC 339
                                   *****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66233260IPR007087Zinc finger, C2H2
SMARTSM003550.31233255IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.7E-6233252IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280235255IPR007087Zinc finger, C2H2
SuperFamilySSF576673.38E-6301337No hitNo description
Gene3DG3DSA:3.30.160.603.3E-5304337IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035582317337IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.621317337IPR007087Zinc finger, C2H2
SMARTSM00355220343366IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MEDPYTSFFN NPYYYYASSF PAPPAAHHLP PSLPTTYTAL YPTVAAAAPP HYSAFFQPPP  60
TTLPPLDDSS PPSPPLREAL PLLSLSPTLS RPNVEADSDS DDDADDFVQR GSSGPHAARA  120
PLFADLNCVP ACCDGDPMDV EATDDAAVAL HIGLPAAPGN GGAETDLLSG LSGRAGGACM  180
EPEEDEECKV DTGAGDSDEL VPLGFASTPI GRLNKGQYWI PTPAQILIGP TQFSCPVCLK  240
TFNRYNNMQM HMWGHGSQYR KGPESLRGVQ PTAMLRLPCY CCAPGCRNNI DHPRARPLKD  300
FRTLQTHYKR KHGLKPFLCR KCGKAFAVKG DWRTHEKNCG KLWYCLCGSE FKHKRSLKDH  360
ARAFGHGHGA FGCNVDGGDG LEDDDEGAVS EIEQDCAGSC RSAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0969070.0FP096907.1 Phyllostachys edulis cDNA clone: bphylf041f10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973849.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-120ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLK3YHV00.0K3YHV0_SETIT; Uncharacterized protein
STRINGSi013819m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-110C2H2 family protein