PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02809.1.g00060.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 296aa    MW: 31739.5 Da    PI: 6.9636
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02809.1.g00060.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.8e-09138185455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +h+ +Er RR+ri +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  Zpz_sc02809.1.g00060.1.sm.mk 138 SHSLAERVRRERISERMRMLQALVPGC----DKVIGKALVLDEIINYVQSLQ 185
                                   8*************************9....555*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-16132200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.47E-9132189No hitNo description
Gene3DG3DSA:4.10.280.105.5E-16134199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.053134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-6138185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-9140190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MADFSSHHSL LLEMPAALTN GHSTNLPGIL FSSQSHGDQA AAKASVASGG AAAMAAEESS  60
SAVVDTSPQG SASPRDRKRK ITEDSAALSS GHSKDCKEGK SKRGKRSSKE AEEKSATEDE  120
APKGYIHVRA RRGQATDSHS LAERVRRERI SERMRMLQAL VPGCDKVIGK ALVLDEIINY  180
VQSLQNQVEF LSMRIASMSP VLYGFGMDSD SLHDQAQKMG AMFQEALAMP GPVLSQVSPA  240
PSQAITDTTS TAAYSVQGQG TISFSQDSSS YLMQAVGEPR QELLNQLVFN NMRSFQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02809.1.g00060.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821629.11e-169transcription factor bHLH137-like isoform X1
SwissprotQ93W883e-53BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A0A9NQF61e-174A0A0A9NQF6_ARUDO; Uncharacterized protein
STRINGPavir.Fa00144.1.p1e-170(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-39bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]