PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02788.1.g00070.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 291aa    MW: 31224.4 Da    PI: 12.0036
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02788.1.g00070.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.7e-11147175331
                                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
                           HLH   3 rahnerErrRRdriNsafeeLrellPkas 31 
                                   r+h+e+ErrRR+riN  +++Lr+llP+ +
  Zpz_sc02788.1.g00070.1.am.mk 147 RSHSEAERRRRQRINGHLAKLRSLLPNTT 175
                                   78************************963 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.623144199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.63E-8147213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-9147202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-8147175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.28E-7147177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MWEPGGLHGS HEALLLQSAG SGAGDVHGHA SGRMPWLGPA AAPSYSYIAP HAPPPPGLFG  60
GTDAAGGPFG GFGVGGGYCG DGGGTAGAVG LFGLDHPSLH QQHHGTPGGG AAGSSRVVSG  120
LLGTLQAELN RMTSREIMDA KALAASRSHS EAERRRRQRI NGHLAKLRSL LPNTTKNELE  180
AWPYQACAIT GSIDLLRLLK ARWHAREGPS RSLRPRRKPR VLRHALSFGE IELAARARQE  240
RTLVSERITS ASRTRRSRRQ ATHQKAKQRL ARMDQGSRPR MQRLFPRAPF L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213217RPRRK
2213219RPRRKPR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02788.1.g00070.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096163e-46AK109616.1 Oryza sativa Japonica Group cDNA clone:002-137-H01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678584.15e-44transcription factor AIG1
TrEMBLA0A1E5VGR11e-47A0A1E5VGR1_9POAL; Transcription factor bHLH30
STRINGSi013911m3e-43(Setaria italica)
STRINGGRMZM2G526668_P021e-43(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2467556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-11bHLH family protein