PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02725.1.g00050.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 369aa    MW: 39313.4 Da    PI: 6.0752
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02725.1.g00050.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.1e-09203250455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Zpz_sc02725.1.g00050.1.sm.mk 203 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 250
                                   8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-15197258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.14E-10197254No hitNo description
Gene3DG3DSA:4.10.280.104.8E-15199257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.301199249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-6203250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-10205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MESRATGGDY IASLLSSSPR LDFGVLGGLP TLEGVAGDGG DSLEKFCGDP GFAERAARLS  60
SFSGQRFGGA GGLFGLPPPS RAASNGDFGG SRETSSVSDP ASAMRDANAK KRKAPAAPKG  120
KGMEPSSQAG EQNNSISDAK RCKTDGGEKK DDSPVKPKAE QAGSDISVED NGQKAGKGKN  180
AKPVEPPKDY VHVRARRGQA TDSHSLAERV RRERISQRMK VLQDLVPGCN KVIGKALMLD  240
EIINYVQSLQ RQVEMFQTCG PSASSVFSLE SSCSGFPFSD QGDVFRSYVT NGMENQCNLN  300
PLDLALSQAT NAQYAFQDGT PSSNLQQRNF WEEDLSGAFH IENGQSQEDG VSAQSFHGQL  360
QSGHMKMEF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02725.1.g00050.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3675801e-88AK367580.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2059B18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445835.10.0transcription factor bHLH78
SwissprotQ9FJL41e-47BH078_ARATH; Transcription factor bHLH78
TrEMBLA0A0A9IY980.0A0A0A9IY98_ARUDO; Uncharacterized protein
STRINGSb07g026610.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.11e-40bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]