PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02572.1.g00050.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 191aa    MW: 21144.4 Da    PI: 9.5806
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02572.1.g00050.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-113178454
                                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                             HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                    ++  rE+ RRd++N++f eL  +l +    + +K++K++iL  A++ +++L
  Zpz_sc02572.1.g00050.1.sm.mkhc 31 TKACREKIRRDKLNKRFLELGAILEPG---KTPKMDKSAILNDAIRVVSEL 78
                                    7789**********************9...9***************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.4552778IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.55E-93083No hitNo description
SuperFamilySSF474592.75E-1331102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-93178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-1331101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-93384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146860.0020193125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MQAQPPSQPI AATAPPNPPW PRSECGAQPS TKACREKIRR DKLNKRFLEL GAILEPGKTP  60
KMDKSAILND AIRVVSELRT EAQKLKDSNE SLQEKIKELK AEKNELREEK QRLKAEKESL  120
EQQIKFMNAR PSLVAHPPVI PASAFTAPQG PAAGQKLMMP VIGYPGFPMW QFMPPSDVDT  180
SDDPKSCPPV A
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02572.1.g00050.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0641380.0KP064138.1 Eleusine coracana cultivar GPU28 bHLH transcription factor bHLH57 (bHLH57) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957935.11e-107transcription factor ILR3 isoform X1
RefseqXP_004957936.11e-107transcription factor ILR3 isoform X2
RefseqXP_015647705.11e-107transcription factor ILR3
SwissprotQ9FH375e-69ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0C5DR541e-114A0A0C5DR54_ELECO; BHLH transcription factor bHLH57
STRINGORUFI07G18300.11e-107(Oryza rufipogon)
STRINGONIVA07G15940.11e-107(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20233885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.12e-71bHLH family protein
Publications ? help Back to Top
  1. Li X,Zhang H,Ai Q,Liang G,Yu D
    Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2478-93
    [PMID:26921305]
  2. Aparicio F,Pallás V
    The coat protein of Alfalfa mosaic virus interacts and interferes with the transcriptional activity of the bHLH transcription factor ILR3 promoting salicylic acid-dependent defence signalling response.
    Mol. Plant Pathol., 2017. 18(2): p. 173-186
    [PMID:26929142]
  3. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]
  6. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]
  7. Samira R, et al.
    The bHLH transcription factor ILR3 modulates multiple stress responses in Arabidopsis.
    Plant Mol. Biol., 2018. 97(4-5): p. 297-309
    [PMID:29882068]