PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02548.1.g00060.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 316aa    MW: 34958.3 Da    PI: 10.6778
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02548.1.g00060.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.12.8e-17174220455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    hn  ErrRRdriN+++  L+ellP++      K +K+++L +A++Y+ksLq
  Zpz_sc02548.1.g00060.1.am.mk 174 FHNFLERRRRDRINEKLKALQELLPNC-----SKTDKVSMLDEAIDYLKSLQ 220
                                   59************************9.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.0E-19167227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-21168237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.508170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.70E-17173224No hitNo description
PfamPF000101.5E-14175220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-18176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MHATGWIGLS RITKAASERG GMEVTASFVS LLRGHPTGAH GRAVGGALSV RPRLRACARS  60
CACVFCGGLD AVASVKDEML GSLAASCAAV LITVPWGEGR SCHQQCKFAF AAAALVSCLG  120
TPLTRRRAGH GLGGSLVEVR HRDDEQGEVR QELMEEGRVP RSTPPTRRSR SAEFHNFLER  180
RRRDRINEKL KALQELLPNC SKTDKVSMLD EAIDYLKSLQ LQLQMLVMGK GLAPVVPPEL  240
PQYMHYIKAD PAQMPSPFRP SQQPRPFQIT QADPHRNSKT TVFNTSRQPG GLRRRQERPR  300
QPPVEETMLE KRRSLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02548.1.g00060.1.am.mk
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95623043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-25phytochrome interacting factor 3