PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02539.1.g00100.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 439aa    MW: 46671.7 Da    PI: 8.4026
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02539.1.g00100.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.15e-11214260454
                                   HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                   +h   Er RR+r+++ f+eL+ llP  +     +K +Ka+i  +A+ +Ik L
  Zpz_sc02539.1.g00100.1.am.mk 214 SHIFTERERRKRMRNMFAELKVLLPDvP-----EKADKATIIGEAISFIKVL 260
                                   67889*********************77.....9***************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-13207271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-10208261No hitNo description
PROSITE profilePS5088813.814210260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-13212276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-8214260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-8216266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MDLVGLGHDG WSRESLERHG RRRPEKQSRL TELDDAPAHA HCGGAAASSR TRKLRCRSSG  60
SAPALLLARG GDVELAAASR TTTVHRSVDG EQNLRLRETV TSEETDGRRA RNVAACSRQG  120
TDASSDHGSA PPAPGVTVTA LSPGENSNSG PCAGVPVVAE EDAGKGKDVV VEHGSAGSGH  180
SDARVLPKGK RSAAEALARE FEDAASGRKK LMSSHIFTER ERRKRMRNMF AELKVLLPDV  240
PEKADKATII GEAISFIKVL EGNVTNLQKR KQDLVLARLA AAAVVNHVAA TSAPPPPGTP  300
LAAAASSDDL PRGWAWLPKQ QEQKPAASPV GFQSWCGTNV VLSVSKDDAL ISVSALNHPG  360
LLVLLMSVLL KHRLDVLTAH VESDGDRRLY SFHARVILTF GSSCDQVNAE AVRMLGGEPP  420
ASEDIYKLAV SEIIIWLST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11926GRRRPEKQ
2207224RKKLMSSHIFTERERRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02539.1.g00100.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-21bHLH family protein