PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02498.1.g00020.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 310aa    MW: 33050.4 Da    PI: 6.1184
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02498.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.81.3e-31111312102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT........ CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks........ 74 
                                   Fl+k+y ++ed+ ++++isw+++g++fvv+ ++efa+++Lpk+Fkhsnf+SFvRQLn+Y  +   +++    +        
  Zpz_sc02498.1.g00020.1.am.mk  11 FLTKTYAMVEDPGTDDTISWNDTGKAFVVWRPDEFARDLLPKHFKHSNFSSFVRQLNTYVSSHPFSSSY---Tqpfvrldr 88 
                                   9**********************************************************5333222222...124567779 PP

                                   .............X..TTSEEEEESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  75 .............k..ekiweFkhksFkkgkkellekikrkks 102
                                                k   + weF+h+ F++g+k+ll  i+r+k 
  Zpz_sc02498.1.g00020.1.am.mk  89 dhelglccvqgfkKavADRWEFAHDCFRRGEKHLLGGIQRRKG 131
                                   999988888776515699**********************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.7E-357129IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.4E-457129IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.62E-307129IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.5E-2911129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-141134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-144961IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-146274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MASPAAGTPP FLTKTYAMVE DPGTDDTISW NDTGKAFVVW RPDEFARDLL PKHFKHSNFS  60
SFVRQLNTYV SSHPFSSSYT QPFVRLDRDH ELGLCCVQGF KKAVADRWEF AHDCFRRGEK  120
HLLGGIQRRK GTGAGAGAAA GPGIPTAIPI SSPPTSSGGE TAVSSSPPRG VAVAPGLTRE  180
LARARRLCDG VRRLMSRYDH GGEGEDEAGS DGGRGGGAGP DGKPMLFGVA IGSKRHRGNE  240
EEEEEDDGAE DNGEEEDDDD ERPVVRARES KKRNDQSDLD VLALSVRAAA AARPGSGAAA  300
GSRDRKSSVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-21112911120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02498.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6630032e-84AL663003.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032E06, complete sequence.
GenBankAP0149602e-84AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126122e-84CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551492e-84CR855149.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0103M18, complete sequence.
GenBankCR8551652e-84CR855165.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0139P06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976526.11e-101heat stress transcription factor B-2a-like
SwissprotQ7XRX31e-92HFB2A_ORYSJ; Heat stress transcription factor B-2a
TrEMBLA0A1E5VLV91e-107A0A1E5VLV9_9POAL; Heat stress transcription factor B-2a
STRINGSb06g025710.14e-98(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-40HSF family protein
Publications ? help Back to Top
  1. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]