PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02454.1.g00050.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 272aa    MW: 29053 Da    PI: 10.274
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02454.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-09190232855
                                   HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   + + RR+ri +++  L++l+P+      +K++ +++LekA+ Y+k Lq
  Zpz_sc02454.1.g00050.1.am.mk 190 AAKVRRERIAEKLKILQDLVPNG-----TKVDLVTMLEKAITYVKFLQ 232
                                   6689*****************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.316182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-12183240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-12184243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.82E-11184236No hitNo description
SMARTSM003532.3E-10188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-6191232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAQASKRATA AASWKPQLRP VVYDDEHSSM SLELFGYHGV VVDGEHDADA GAAFPGGGMQ  60
LAFDVDNFKG GAGCGPANYY SWTVYGGGGS GARANSSSSS SVLSFEQAAA AGSTWMLIAP  120
PAVTRTAVRL IIIPVEKFRS WAASSRRQRR RRSVHAREVQ AAGGEKQCGG RKSKAKAAAP  180
APTKDPQSIA AKVRRERIAE KLKILQDLVP NGTKVDLVTM LEKAITYVKF LQLQVKVLAA  240
DEFWPAQGGK VPELSQVKDT LDAILSSQHS NK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150RRQRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02454.1.g00050.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819067.19e-85transcription factor bHLH83-like
TrEMBLA0A1E5W9542e-86A0A1E5W954_9POAL; Transcription factor bHLH83
STRINGSb03g008290.18e-84(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.11e-45ROOT HAIR DEFECTIVE6