PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02398.1.g00040.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 439aa    MW: 46790.3 Da    PI: 9.0739
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02398.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.5e-12233276755
                                   HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    +Er RR+r+N+++ eLr+++P+      +K++Ka++ + A+ YI +Lq
  Zpz_sc02398.1.g00040.1.am.mk 233 VMERDRRRRLNEKLYELRSVVPNI-----TKMDKASVIRDAIAYIEKLQ 276
                                   68*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.815226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-16228290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.33E-14229280No hitNo description
Gene3DG3DSA:4.10.280.101.7E-14232292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-14232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-10233276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MTRTGGQQPT GAAVYGRTTQ GPAPACPVLL RLRSLTGGIH PPDVLLAAHA GHQMLSALSA  60
LGIASLELLR TPTPTSSSYS VPHKARTLSH KNMVISEQTV ASSTSAGGCN LRAACLKWSP  120
AAGRAAGQRP METDVLGVGF DFYWTPPPGL VLDAHDLDLA GFDSCSMYMP AEAETAADST  180
SGLCPYREGS NSPDGANSSN AAAVPTASSS PPSPQPLLLL GGGGGHAGSK NMVMERDRRR  240
RLNEKLYELR SVVPNITKMD KASVIRDAIA YIEKLQEEER RVLAEISALE SSTAVRSENA  300
GRDADDADSL PRRKKPRRVS PADDTRAASS LPLKILEVQV SKAWEKLAVR SVWCSRGRDA  360
VPKVCRALEP LRLRIVTATV AAVGDTVVHT MFAQVTPNNN SLLLTDIAGA WLAAPYRTLW  420
LHASLSSSCL WDRRMTSTP
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02398.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823076.16e-87transcription factor bHLH35-like isoform X1
TrEMBLA0A0A9IMR01e-98A0A0A9IMR0_ARUDO; Uncharacterized protein
STRINGPavir.Gb02374.1.p6e-83(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.21e-33bHLH family protein