PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02391.1.g00030.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 364aa    MW: 39365.6 Da    PI: 8.3942
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02391.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.53e-07194216123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   + C+ Cgk F+r  nL+ H+r H
  Zpz_sc02391.1.g00030.1.am.mk 194 HYCQVCGKGFKRDANLRMHMRAH 216
                                   68*******************99 PP

2zf-C2H210.90.0014283306123
                                   EEETTTT.EEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                                   y+C+ C+ k+Fs  s+L++H + +
  Zpz_sc02391.1.g00030.1.am.mk 283 YVCNRCNlKHFSVLSDLRTHEKHC 306
                                   9*******************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.46E-6191218No hitNo description
SMARTSM003550.0034194216IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-6194220IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.653194221IPR007087Zinc finger, C2H2
PROSITE patternPS000280196216IPR007087Zinc finger, C2H2
SMARTSM00355140245278IPR015880Zinc finger, C2H2-like
SMARTSM0035547283309IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MMGSSSMIPP VPGSGGNPPY FLQQQQQQDL FHAQLDGIVM DGGGAFMEPP AADAHCHALL  60
YNLSVLKDKV QQLQPLVGLA VAHDGPVAAA SSGAAAVIQE IISAASSMMY AFQQFYCHAS  120
DQQAVQLVDG HYKENHSSGG CGDQQPQAAV IDQAVNVNLM PQQQHQHGAC SKQTADTAAI  180
IDLDAAELLA KYTHYCQVCG KGFKRDANLR MHMRAHGDEY KSSAALANPA KGGDAAAAPP  240
VKSYYSCPQE GCRWNRKHAK FQPLKSVICA KNHYKRSHCP KMYVCNRCNL KHFSVLSDLR  300
THEKHCGDHR WLCSCGTSFS RKDKLIGHLA LFAGHHPAVP LDSRHATNGK RSSSSIDAGA  360
ATRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126161e-116CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBankAP0149641e-116AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAP0055441e-116AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01.
GenBankAP0045871e-116AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10.
GenBankAK0632901e-116AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974930.21e-144PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLK3YI251e-146K3YI25_SETIT; Uncharacterized protein
STRINGSi013894m1e-146(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.14e-89C2H2 family protein