PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02229.1.g00130.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 376aa    MW: 40283.2 Da    PI: 8.479
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02229.1.g00130.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.5e-13306351655
                                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     +++Er RR +i +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  Zpz_sc02229.1.g00130.1.sm.mkhc 306 SIAERVRRTKISERIRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 351
                                     689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.945300350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-16303360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.68E-13304355No hitNo description
Gene3DG3DSA:4.10.280.102.8E-15305363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-10306351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-13306356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MFGSPVSKDL NLPVQPPMTL SGLLRYRSAP STMLGELCED FLPAGPRAGR PEAGTDNVFT  60
RFLADHQIRE KPPAPAPAAT HFPNEAAMAS QQQQQMMYHS QQQQQQQMAG VESGLYRTAS  120
SGMEAAGAGV SNLVRQSSSP AGFLNHLNMD DGYTNMLRAG VGVGFRNGSS AAAADSPAGG  180
GGGSRLKGQL SFSSRQGSLM SQISEMESEE LGGSSPEAAG GGRGFIPGYP MGSGWEDSSS  240
LMTDNMTSGM KRPRDSSEPG QNGLAHQFSL PKTSSEMAAI EKFLQFQDAV PCKIRAKRGC  300
ATHPRSIAER VRRTKISERI RKLQELVPNM DKQTNTSDML DLAVDYIKDL QKQVKVLNEG  360
RANCTCAASK HQQHTG
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02229.1.g00130.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804212.10.0transcription factor bHLH130-like
RefseqXP_025804213.10.0transcription factor bHLH130-like
TrEMBLA0A2T7EX850.0A0A2T7EX85_9POAL; Uncharacterized protein
TrEMBLA0A3L6QNR10.0A0A3L6QNR1_PANMI; Uncharacterized protein
STRINGPavir.Ba00676.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-59bHLH family protein