PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02112.1.g00070.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 644aa    MW: 67919.2 Da    PI: 10.5087
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02112.1.g00070.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002168190123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   + C++C+k F r  nL+ H r H
  Zpz_sc02112.1.g00070.1.am.mk 168 FFCEICSKGFQRDQNLQLHRRGH 190
                                   67*******************88 PP

2zf-C2H213.40.00023244266123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC +C+k +  +s+ k H + +
  Zpz_sc02112.1.g00070.1.am.mk 244 WKCDKCDKKYAVQSDWKAHVKIC 266
                                   58*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.3E-4167190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.29E-7167190No hitNo description
PROSITE profilePS5015710.658168190IPR007087Zinc finger, C2H2
SMARTSM003550.093168190IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280170190IPR007087Zinc finger, C2H2
SMARTSM00355220209239IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-4232265IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.29E-7239264No hitNo description
SMARTSM0035571244264IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MQPVLLHFDP SLLSAHGDRL ETITIAFRLN QWRARGPVRV PKPDANPRHR LPPRGRHGAL  60
TASGFLAPCC LSPQAARQRS SSRRPVARLG TRVVRFGRRP TAIRKETTGE MEVEATTTTT  120
AASSSGRAPQ LPPPGPPAKK KRALPGMPDP DAEVIALSPK TLLATNRFFC EICSKGFQRD  180
QNLQLHRRGH NLPWKLRQRS GKEPRKRVYV CPEPSCVHHD PTRALGDLTG IKKHFCRKHG  240
EKKWKCDKCD KKYAVQSDWK AHVKICGSRE YRCDCGTLFS RRDSFITHRA FCDALAEENA  300
NARAGAAEEE NGSSAAVGPP PAPPPTQAPP PAAPAPLKQQ PHPPFPAAAP APHHAEQRNE  360
RETNASEPVQ FTPPPPQQAP LPVSSQAPAS AANVSISSST SSVVASSQSQ IGGGLFAPSS  420
MAPAPQFTNL GPERALPVKP PPLCLSTDAS SSIFAAPVAS DRQLRIAPPP PPSPSPHMSA  480
TALLQKAAQM GATSSSSSFL RGLGLDVSTS SPGPSSSGQP RHAETPLQQW PPRLGTEAAA  540
PMLSAGLGLG LPYDSTGATV CLPERMMGQS ALFAAKPATL DFLGLGMSPT AGASASRGLS  600
AVIQPIGGAV GIGGSSAGAA EAFGAEHGAQ AKPWERNPSS SQIL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9555780.0EU955578.1 Zea mays clone 1537717 nucleic acid binding protein mRNA, complete cds.
GenBankBT0546180.0BT054618.1 Zea mays full-length cDNA clone ZM_BFb0032E02 mRNA, complete cds.
GenBankBT0545020.0BT054502.1 Zea mays full-length cDNA clone ZM_BFc0103M17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985335.10.0PREDICTED: protein indeterminate-domain 1-like
SwissprotQ9LVQ71e-138IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLK4A8770.0K4A877_SETIT; Uncharacterized protein
STRINGSi035083m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-88indeterminate(ID)-domain 2