PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02041.1.g00130.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 261aa    MW: 27062.5 Da    PI: 9.0632
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02041.1.g00130.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH110.000791982213255
                                   ..TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  32 kapskKlsKaeiLekAveYIksLq 55 
                                   +  + K++ +++LekA+ Y+k Lq
  Zpz_sc02041.1.g00130.1.sm.mk 198 QSIAAKVDLVTMLEKAITYVKFLQ 221
                                   667889999**************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.8E-4200229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MAQASKRATA AASRKPQLRP VVYDDEHSSM SLELFGYHGV VVDGEHDADA GAAFPGGGMQ  60
LAFDVDNFKG GAGCGPANYY SWTVYGGGGS GARANSSSSS SVLSFEQAAA AGGTWMLIAP  120
PAVTRTVRCG SADHHAGREI QELGSVQPQA KAAQKRARPI FYANLVGSEV QAAGGKKQCG  180
GGKSKAKAAA PAPTKDPQSI AAKVDLVTML EKAITYVKFL QLQVKVLAAD EFWPAQGGKV  240
PELSQVKDAL DAILSSQHSN K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173181GGKKQCGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02041.1.g00130.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819067.14e-73transcription factor bHLH83-like
SwissprotQ9FJ005e-28BH086_ARATH; Putative transcription factor bHLH086
TrEMBLA0A1E5W9546e-75A0A1E5W954_9POAL; Transcription factor bHLH83
STRINGSb03g008290.12e-72(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.12e-27ROOT HAIR DEFECTIVE6
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Kim CM,Dolan L
    ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon.
    PLoS Genet., 2016. 12(8): p. e1006211
    [PMID:27494519]
  3. Feng Y, et al.
    Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
    [PMID:29233944]