PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01925.1.g00020.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 846aa    MW: 90104.4 Da    PI: 11.8036
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01925.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP107.71.8e-335416593125
                           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec..eae 76 
                                   g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+++a  ai  l+ +            +  e++
  Zpz_sc01925.1.g00020.1.am.mk 541 GGKDRHSKVYTAKGIRDRRVRLSVPTAIQFYDLQDRLGFDQPSKAIEWLINAAAGAIERLPALdpaafA------AapEPG 615
                                   78*************************************************************444330......233233 PP

                           TCP  77 sssssasnsssgkaaksaakskksqksaasalnlak.esrakarararer 125
                                   +   + ++ s       +  s+ s++s+ s l+l++ +sr    + +r+r
  Zpz_sc01925.1.g00020.1.am.mk 616 EAATKRQQGSV------SGGSSTSETSKGSELSLSRsDSRGGGASASRDR 659
                                   33333221111......122233333333334444444443333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136932.452542600IPR017887Transcription factor TCP subgroup
PfamPF036341.9E-33542653IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MRRSARAPDP DKVERKRKLP RAFRIGPRSL LSVIGVMRRV HDLDCMLRRC RRRGGAVGIS  60
SCSRATGSCS SLVSRRRVRV KRHADSGTVA AESGAVIEPV PSLPRENREK HVWNQHLSTC  120
SIHPSTSSRN VSPGATNGGR TSGGYRPAIS ARVFTRPTHL AGLLSSGRMP AATRRRGFPP  180
VTCLMQRKSL DQLEGGEAAA GGDCQINGGD RRTAGSSEAT CAFRFPAHIS SMPPSLPASS  240
STARSEGWMS ATPPSNEPPV AAKVAIIEGH QGHARFAMRP PAVKRPVEEQ LKKKTVGAPA  300
AAGSRYARHG SKRRTPATSP STVAIPTHPT DRLTDECARA VQRRRRCRSQ TALAVGPSEA  360
FRRRCFPLLS AAFASPQRPA REQTQSVSVS GWQCAPQETA TKRPFTAFEQ QQGRRGRRAP  420
TRRQKQGHPP GVAVATHISA AAAAAALLWH RIDRNRQAPP VHRSSSIKTP HFYERLRRAG  480
MENGAAGDGA SGRPHGGAKR GRGGVMRGSE TETAWGQPPA LPPPPQGAGT ASRICRVGRG  540
GGKDRHSKVY TAKGIRDRRV RLSVPTAIQF YDLQDRLGFD QPSKAIEWLI NAAAGAIERL  600
PALDPAAFAA APEPGEAATK RQQGSVSGGS STSETSKGSE LSLSRSDSRG GGASASRDRD  660
VTVASTSTQA ASFTELLTGA AEHRQAWQPQ PNVSAAVAHT EKGANGLSTH VFSAPTVVKF  720
GNAPPFGMVP AQPLNFPTPV EMPHFSLAQD ALAASSAPAG DYNLNFSMSS GFLGANRGTL  780
QSNPQTNFSG HHHQQLQRLE GQFLFGYAAA AAAAAHPSSE NQLNASAAIQ LWDGFRHPGM  840
KEKSKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-23547601155Putative transcription factor PCF6
5zkt_B2e-23547601155Putative transcription factor PCF6
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01925.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-29TCP family protein