PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01915.1.g00110.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Dof
Protein Properties Length: 330aa    MW: 33950.7 Da    PI: 9.5181
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01915.1.g00110.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.12.3e-3957117262
                        zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                                   kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ss
  Zpz_sc01915.1.g00110.1.am.mk  57 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSS 117
                                   7899******************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3153115IPR003851Zinc finger, Dof-type
PfamPF027012.0E-3359115IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.05961115IPR003851Zinc finger, Dof-type
PROSITE patternPS0136106399IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEEMIMAGNP YPNQNRNPAP AAPSAPGPQR AGGAPAAGAS SGAAAGAGTE RRARPQKEKA  60
LNCPRCNSTN TKFCYYNNYS LQQPRYFCKT CRRYWTEGGS LRNVPVGGGS RKNKRSSASV  120
SAAAAVATSA AMVPVGLAAK NPKLMHEGAQ DLNLAFPHHN GRGLQPPEFA AFPSLESSSV  180
GAFSALDLLR STGCYVPLQH VQLGMHAEYE SAGFALGELR MPPPPQSQSM LGFSLDTHGT  240
GGVGGAGGYS AGLQDSAAAG RLLFPFEDLK PAVSAGGGVA NAGGNQYKHN KDQGGDGRSA  300
SRVTGGHDTP GFWNNSMIGN GSSNGGGGPW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01915.1.g00110.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5824101e-131KC582410.1 Sorghum bicolor dof16 protein (dof16) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826521.11e-142dof zinc finger protein 2-like isoform X2
SwissprotB9F1L81e-115DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBLA0A1E5VJZ31e-144A0A1E5VJZ3_9POAL; Uncharacterized protein
STRINGPavir.Aa00902.1.p1e-141(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23693486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.11e-47Dof family protein
Publications ? help Back to Top
  1. Washio K
    Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains.
    Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62
    [PMID:11470159]