PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01865.1.g00010.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family RAV
Protein Properties Length: 346aa    MW: 38099.8 Da    PI: 9.5406
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01865.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.52.5e-1155103155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+ykGV   + +grW A+I++      r +r++lg+f  +e Aa+a + a+++++ 
  Zpz_sc01865.1.g00010.1.am.mk  55 SRYKGVVPQP-KGRWGAQIYE------RhARVWLGTFPDEEAAARAFDVAARRFRS 103
                                   78****9888.7*********......44***********************9986 PP

2B377.51.5e-24168263183
                                   EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS.....-EEEEEE..EEETTEEEE-TTHHHH CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesg.....rsWevkliyrkksgryvltkGWkeF 68 
                                   f+k+ tpsdv++++rlv+pk +ae+h        + + + ++ l +ed +      ++W+++++y+ +s++yvlt+GW++F
  Zpz_sc01865.1.g00010.1.am.mk 168 FEKAVTPSDVGRLNRLVVPKVHAEKHfpplsekdDDDDAAPVLLAFEDADPnggngKVWRFRFSYWSSSQSYVLTRGWSRF 248
                                   89****************************99996667899999999965455888************************* PP

                                   HHHHT--TT-EEEEE CS
                            B3  69 vkangLkegDfvvFk 83 
                                   v+++gL +gD+++F+
  Zpz_sc01865.1.g00010.1.am.mk 249 VREKGLAAGDTITFS 263
                                   **************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.33E-1555111IPR016177DNA-binding domain
PfamPF008473.1E-655103IPR001471AP2/ERF domain
PROSITE profilePS5103220.33656111IPR001471AP2/ERF domain
SMARTSM003801.0E-2056117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-1956111IPR001471AP2/ERF domain
PRINTSPR003679.0E-55768IPR001471AP2/ERF domain
PRINTSPR003679.0E-57793IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.1E-33160265IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-26163263IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-24166262No hitNo description
PROSITE profilePS5086312.633168279IPR003340B3 DNA binding domain
PfamPF023622.6E-21168263IPR003340B3 DNA binding domain
SMARTSM010199.1E-16168277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MYGWLYHKHQ RRRSRSSPLF QHLPLCRRTA MSTPSSTQEE AQRAGMVASQ AAPASRYKGV  60
VPQPKGRWGA QIYERHARVW LGTFPDEEAA ARAFDVAARR FRSHDAAVNF PGPADADELA  120
FLAARPKAEV VDMLRKHTYD DELRQGLRSV SGGGGVCEAD PVPRTPLFEK AVTPSDVGRL  180
NRLVVPKVHA EKHFPPLSEK DDDDDAAPVL LAFEDADPNG GNGKVWRFRF SYWSSSQSYV  240
LTRGWSRFVR EKGLAAGDTI TFSQATTPPT PTTTSADGEA YTARRLFIEC RKRKRTRTDS  300
DGSVVVDGCP VHGGDARVVR LFGANIAAAI GVHAFVEVEP QLQVGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-3716726613104DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01865.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806570.11e-112AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9AWS71e-91Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A3L6R5X11e-114A0A3L6R5X1_PANMI; Uncharacterized protein
STRINGTraes_3B_68BFA25F1.11e-98(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.12e-77related to ABI3/VP1 1