PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01827.1.g00080.1.am.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 450aa    MW: 50254.4 Da    PI: 6.5098
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01827.1.g00080.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.8e-10254296754
                                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                     + Er RR+++N ++  Lr+l P++     +K + a+i+  A+eYI++L
  Zpz_sc01827.1.g00080.1.am.mkhc 254 ATERERREQLNVKYGALRSLFPNP-----TKSDRASIVGDAIEYINEL 296
                                     78**********************.....9***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.008247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.67E-11252308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-7253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-10254309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-7254296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.86E-7256301No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MVPTSFLNGV RFCRSSVKVT EGKMIISGDY FDGSHDSVIM SGSMIHDSSQ SCIYNGTNTE  60
EQNFRDLSNP ADAHLTSEPS NHILSHQIGQ GPQTMAMEQQ ILNYDDASYP HGAYTAANDL  120
LNVLQIHRCS SAPEFPSTQH SLGDPIQNNV NHLERNNDLS GAVIHESGMM FDDSTLPLGY  180
HATQSHLLKD LYHSLPQNYG LLTSDDERDG IIGVPGVSRN IFQEIDGRQF DSPALGKRRQ  240
KCGFGKAKGT GNYATERERR EQLNVKYGAL RSLFPNPTKS DRASIVGDAI EYINELNRTI  300
KELKILVEKK RNSTDRRKKV KLDDEAADDG DSSSMQPMRD DQNDQMHGAI RSSWVQRRSK  360
ECEVDVRIVD DEINIKFTEK KRANSLLCAA KVLEEFHLVL INVVGGTIGD HHIFMFNTKI  420
PKGSSVYACA VAKKLIEVVE MKHQALNIFN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01827.1.g00080.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953537.20.0transcription factor EAT1
SwissprotQ7X8R01e-174EAT1_ORYSJ; Transcription factor EAT1
TrEMBLK3YY420.0K3YY42_SETIT; Uncharacterized protein
STRINGSi019192m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.11e-51bHLH family protein