PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01752.1.g00080.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 443aa    MW: 46350.4 Da    PI: 9.55
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01752.1.g00080.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.59.8e-38582042131
                           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................. 65 
                                    g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LG+d++sk+ieWL+++a  ai++l+++                 
  Zpz_sc01752.1.g00080.1.sm.mk  58 SGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGYDQPSKAIEWLIKAAADAIDKLPSLdaaagfpshpasaagat 138
                                   689*************************************************************77775543333322221 PP

                           TCP  66 ssssaseceaesssssasnsssg.............kaaksaakskksqksaasalnlak.esrakarar...arertrek 129
                                   s                 ++ ++              +++ + +s+ s++s+ s+l+la+ e r kar+r   arer re+
  Zpz_sc01752.1.g00080.1.sm.mk 139 S-----------------KDPAPadadaavadfddqGNQQRSGCSSTSETSKGSVLSLARsEGRVKARERcaqARERARER 202
                                   1.................111112223344555554444444477777788888888888888866666666655555555 PP

                           TCP 130 mr 131
                                    +
  Zpz_sc01752.1.g00080.1.sm.mk 203 SA 204
                                   43 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-3959205IPR005333Transcription factor, TCP
PROSITE profilePS5136931.85660118IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MEACGGGVGE ARKRGRVKDG ETGGELPDAK RRAAALAQQP WAAQQHPASR IYRVSRASGG  60
KDRHSKVYTA KGIRDRRVRL SVATAIQFYD LQDRLGYDQP SKAIEWLIKA AADAIDKLPS  120
LDAAAGFPSH PASAAGATSK DPAPADADAA VADFDDQGNQ QRSGCSSTSE TSKGSVLSLA  180
RSEGRVKARE RCAQARERAR ERSAAAGRDK DKDPGDDGGA TGRRATATAS SFTELLTGMA  240
AAAAAAPAVA EHKQQASASW TPMTISATAD YIGFAQPRKA AGHAMAHTFA SPAPHLGNIS  300
MAPAAQHFGL SAGAVTVASG GGEPHAEMTQ FSFLQDHFMP GHAVPASGPA GDYNLNFSMS  360
SGLVGVNSRG TLQSNSQPHI SGHHHHHQQQ LQRLSTPLDA PNIPFLFSPA AAVTTPTAAD  420
TQFAAFQLWN GFHHADMKEK GKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-2765119155Putative transcription factor PCF6
5zkt_B5e-2765119155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01752.1.g00080.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1904561e-134EU190456.1 Zea mays RFLP probe php20581 (CBM 2.10) genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020396804.10.0transcription factor PCF6
TrEMBLA0A1E5W0K90.0A0A1E5W0K9_9POAL; Transcription factor PCF6
STRINGPavir.Ba03864.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.25e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2