PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01719.1.g00140.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ZF-HD
Protein Properties Length: 182aa    MW: 18942.6 Da    PI: 8.9124
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01719.1.g00140.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer83.72e-264596359
                   ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                                  +v Y eCl+NhAa+ Ggh+vDGCgEf+p+      aa+l CaACgCHR+FHRr  ++
  Zpz_sc01719.1.g00140.1.sm.mk 45 GVYYLECLQNHAANAGGHVVDGCGEFLPA-----PAASLSCAACGCHRSFHRRAIAS 96
                                  689*************************9.....5789***************9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.8E-224693IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-84892IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.9E-234893IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.54893IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEALVDVKYR LALFRHGGVA NAKNKLGHPA AATAGGRAIE SAAAGVYYLE CLQNHAANAG  60
GHVVDGCGEF LPAPAASLSC AACGCHRSFH RRAIASHSTV VPPPRLLRDG WESESDYDDG  120
RPMSPLPAQA LARPFGCSLV PALTPGAPAT CRPPVPAVHQ GPVAVASSAS VRKRFRTKFS  180
PE
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01719.1.g00140.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146009.11e-30ZF-HD homeobox protein
TrEMBLB7ZYN23e-29B7ZYN2_MAIZE; Zinc-finger homeodomain protein 8
TrEMBLK4JC443e-29K4JC44_MAIZE; ZF-HD-type transcription factor (Fragment)
STRINGGRMZM2G438438_P016e-30(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3601833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.18e-16zinc finger homeodomain 1