PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01608.1.g00220.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 388aa    MW: 41200.9 Da    PI: 8.4964
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01608.1.g00220.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.000291661851231
                                   HHHHHHHHHHHHHCTSCCC. CS
                           HLH  12 RRdriNsafeeLrellPkas 31 
                                   RR++iN+++  L++l+P +s
  Zpz_sc01608.1.g00220.1.am.mk 166 RREKINERMKLLQDLVPGCS 185
                                   9****************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.2E-4166185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDSFAWALVS RTAGLASGNA ITDARGGVLL PSMLGFQLPP PPGLEHDNFT VDSVLVDRAV  60
RSSCFGAVSD HDKVTTNGGA GEDDNAETEV GGVHSDGWTA EATAGSVLGT DQAKEPDAST  120
DSPDGSGRSN GAGAPKMKGQ GVKEARKSTP MSGRGRGRQL ITASPRREKI NERMKLLQDL  180
VPGCSKLIRF PGAPSSAPIG SSFSQEMMPK LPLLSECFIT WTARCTGQDN WHTDQISVKN  240
FCTSSISERL RDGPMFYATV GFGGLLWAAT ELDELPVHLA GVGGFAVPCE KITVRLASGH  300
RTYTTMISVS RRVGTRLASR PGIHSTPVIT TLLMVIFTLS GSGILCRRLF LVIDRAVIRY  360
RLRGKRASLE ATEDVPPPIS GDGLKAFS
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01608.1.g00220.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821587.14e-41transcription factor bHLH49-like
TrEMBLA0A3L6RLL82e-45A0A3L6RLL8_PANMI; Transcription factor bHLH49-like isoform X1
STRINGPavir.Fb01828.1.p2e-40(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3367533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26260.32e-07cryptochrome-interacting basic-helix-loop-helix 5