PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01608.1.g00130.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 406aa    MW: 43952 Da    PI: 8.3328
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01608.1.g00130.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.37.4e-05203221220
                                     HHHHHHHHHHHHHHHHHHH CS
                             HLH   2 rrahnerErrRRdriNsaf 20 
                                     r +h++ E+rRR++iN+++
  Zpz_sc01608.1.g00130.1.sm.mkhc 203 RSKHSATEQRRRSKINDRL 221
                                     889**************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.3E-4200221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-6201253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.03E-5203234No hitNo description
Gene3DG3DSA:4.10.280.103.8E-5222249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGLQGDKATH DFLSLYSAAK DSALPLIPGS KKTPPSQGFF LKTHDFLQPL ERPSSPSQQP  60
AAEKPVDARH ALPGGVGTFS INRPTADLPG SVKQEPAAFA LWGQPEPRGH PWALPFAAAR  120
CVAVAPARPQ QQQQMPLDRK AGGGFTEAGS RSSGSGGFDD DDDHAACREV SSSVKELTVR  180
VEETKGGSCS GSAGTDKLPN TPRSKHSATE QRRRSKINDR LVIEYIRFLQ EKVQKYEVSH  240
HEWNQENAKV APWSNIYFRS FWKNAQNKDE MNGDTAPDPS QVIKNGSSLP FPFAVKPADG  300
NNAAPFEIAS AGHELAEANQ KGCVSYKEAD TASNIPNNVA SQQAAHLMKS LPTEVHRVNS  360
EMLKDPELAI DEGTISLSSQ YSQGNSPVKQ LMAKRFGTNR SRGMGL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01608.1.g00130.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822754.11e-168transcription factor BIM1-like isoform X1
TrEMBLA0A2T7D8Q51e-175A0A2T7D8Q5_9POAL; Uncharacterized protein
STRINGSi013622m1e-157(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.39e-18bHLH family protein