PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01557.1.g00020.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 402aa    MW: 42939 Da    PI: 6.0182
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01557.1.g00020.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.7e-11187263555
                                   HHHHHHHHHHHHHHHHHHHHCTSCCC.............................TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   5 hnerErrRRdriNsafeeLrellPkas..........................kapskKlsKaeiLekAveYIksLq 55 
                                   h ++Er+RR+++N++f eL +++P++                              s  ++Ka+iL  A++Y+k+Lq
  Zpz_sc01557.1.g00020.1.sm.mk 187 HIIAERKRREKMNQRFIELSTVIPNLRkvrikpkslvstclkstpdtgiaqrkWFFSDQMDKATILSAATRYVKDLQ 263
                                   899**********************777*********************9988566788*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.389182262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-14186212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-8187263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.47E-11187266No hitNo description
Gene3DG3DSA:4.10.280.107.5E-16187266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-12188268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-14243271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MEDSSLFMQW AMTTLHHEHQ QAVAVDDDCG EATTFPSLQA LREASQAAEM IQELIAVDAE  60
DHPANSWSSS DGDATDGSSA DNNNNLAPAA VHHDICPVSS PSNPVARRVV DPSRNVAGSG  120
TSSPVTWNFS AAAAAAQTSG DYGDGMLTET AAATRGPRPD LAYGSLPVRR AGVKSSGFIA  180
ATYMQGHIIA ERKRREKMNQ RFIELSTVIP NLRKVRIKPK SLVSTCLKST PDTGIAQRKW  240
FFSDQMDKAT ILSAATRYVK DLQEKLNELE AGGRGSHGRS VESETVVVVK RPYPHAATAA  300
HDGDGSPLSA SSGTPAAASK QLPEIEARFT NKSVMVRIHC ENGKAVVVKV LAEIEELHLG  360
IIHANVEEGF PVTAEDIVSR LNSVLLPPVH SSCSSPELET GN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190195ERKRRE
2191196RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01557.1.g00020.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140919.11e-125uncharacterized protein LOC100272997
RefseqXP_020403288.11e-125putative HLH DNA-binding domain superfamily protein isoform X1
RefseqXP_020403289.11e-125putative HLH DNA-binding domain superfamily protein isoform X1
TrEMBLA0A2S3IJF21e-124A0A2S3IJF2_9POAL; Uncharacterized protein
TrEMBLB4FS751e-124B4FS75_MAIZE; BHLH transcription factor
STRINGGRMZM2G120021_P011e-124(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-26bHLH family protein